Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2k11
         (820 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          26   0.48 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.6  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   5.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   7.8  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   7.8  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.8 bits (54), Expect = 0.48
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 486 RHPARYRRPSVEARTRSTHAGLHDRRDDE 572
           RH  RY+RP      R+T +  +DR  +E
Sbjct: 154 RHHPRYKRPRTTFEPRATDSRHYDRYKEE 182


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 598 TPAHHYSEFKFKTYAPIAFRYFRDLFGIQPDDFL 699
           T +H   +   +TY    F Y  D   IQP + L
Sbjct: 445 TSSHILQQPSIRTYTQQQFPYVHDTLQIQPQEQL 478


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 609 SLFRVQIQNVRADRVPLLQRFVWDT 683
           S+  +Q    +  + PLL+RF W T
Sbjct: 18  SVHGIQKWGTQFGQAPLLERFFWRT 42


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 208 FLFHFYITLYSSTIQFFYVHSNDSHGS 128
           F+F  +  ++++ IQF  VH    +GS
Sbjct: 279 FVFLSFAFIFATIIQFAVVHYFTKYGS 305


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 168 FNSFMCTVTILMAHFALRGITTIQYSL 88
           +N    T   ++ HF + G   IQY+L
Sbjct: 88  YNMLRTTAINVIRHFGIVGECNIQYAL 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,158
Number of Sequences: 438
Number of extensions: 4604
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)