Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2k08
(764 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 33 0.25
01_05_0246 + 19880364-19880565,19880721-19880801,19880891-198810... 32 0.58
05_04_0400 + 20977173-20977481,20978258-20978577,20978724-209788... 30 2.3
03_01_0238 + 1854070-1854344,1854621-1854712,1854852-1855045,185... 30 2.3
02_04_0052 + 19271014-19271627,19272055-19272224,19272321-192725... 29 3.1
01_04_0038 - 15339047-15339230,15339683-15339741,15340031-153401... 29 3.1
09_02_0292 + 6991202-6991937,6998629-6999185,6999489-7000196 29 5.4
06_03_1184 - 28255999-28256079,28256181-28256222,28257662-282577... 29 5.4
09_04_0588 - 18789971-18790000,18790334-18790507,18791470-187919... 28 9.4
03_05_0026 + 19966616-19966703,19967992-19968058,19968599-199686... 28 9.4
>01_06_0124 - 26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 187 TSSDLNDQITKQGDLVRSLKAAKAEKTKVDEAVKVLLE 300
T+S +ND T DLV ++ ++K KV+E +K++ E
Sbjct: 1164 TASKINDMETNTKDLVNTIVLLSSQKNKVEEHMKIITE 1201
>01_05_0246 +
19880364-19880565,19880721-19880801,19880891-19881054,
19881784-19881835,19882110-19882462
Length = 283
Score = 31.9 bits (69), Expect = 0.58
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = +2
Query: 494 HCWNSKPNTRLPPDKIGSQDPRLQQWPPPHRPMTSP--LSIVTSPRRETWCAR 646
HC + R P G+ + + WPP + P L ++S R WC R
Sbjct: 151 HCAQAARQWRAPASSAGTTNGQPDVWPPMPNCLNQPNELPFISSKARMAWCYR 203
>05_04_0400 +
20977173-20977481,20978258-20978577,20978724-20978850,
20979827-20979914,20980328-20980425,20980607-20980676,
20980787-20980887,20981207-20981323,20981417-20981493,
20981716-20982229
Length = 606
Score = 29.9 bits (64), Expect = 2.3
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +1
Query: 166 VAAALTPTSSDLNDQITKQGDLVRSLKAAKAEKTKVD----EAVKVLLELKAKYKTATG 330
V A T S+LN +++ Q DL R AEK KVD E V L L +K K A G
Sbjct: 428 VPIANNTTKSELNCKLSGQMDLTRIETLYHAEKEKVDGHILELVVWLHHLISKSKNANG 486
>03_01_0238 +
1854070-1854344,1854621-1854712,1854852-1855045,
1855529-1855568,1855734-1855815,1856972-1857049,
1857144-1857269,1857544-1857665,1858018-1858057,
1858250-1858324,1858414-1858585
Length = 431
Score = 29.9 bits (64), Expect = 2.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 192 RGWSQRRGHRLARLNALSWFRR 127
+GW+++ H+ RLN SW+ R
Sbjct: 261 KGWTEKGAHKYGRLNEQSWWER 282
>02_04_0052 +
19271014-19271627,19272055-19272224,19272321-19272550,
19272657-19272765,19272858-19272985,19273102-19273203,
19273285-19273566,19273660-19273769,19273851-19274145,
19274242-19274475,19274705-19274935,19275167-19275478
Length = 938
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 217 KQGDLVRSLKAAKAEKTKVDEAVKVLLELKAKYKT 321
K L R + E+ D+AVK+LL L+ KY+T
Sbjct: 433 KDKALARRFQPVLVEEPSQDDAVKILLGLREKYET 467
>01_04_0038 -
15339047-15339230,15339683-15339741,15340031-15340160,
15340248-15340498,15340632-15341225,15342050-15342511
Length = 559
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +1
Query: 184 PTSSDLNDQ---ITKQGDLVRSLKAAKAEKTKVDEAVKVLLELK 306
P+ SD+ + ++GD V LKAAKA K ++ AV L + K
Sbjct: 220 PSESDIEAARVVVKEKGDAVAQLKAAKASKQEITAAVAELNKAK 263
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 589 NDVTALDRDVTAQGDLVRSLKASKADKAKIDEAV 690
+D+ A V +GD V LKA+KA K +I AV
Sbjct: 223 SDIEAARVVVKEKGDAVAQLKAAKASKQEITAAV 256
>09_02_0292 + 6991202-6991937,6998629-6999185,6999489-7000196
Length = 666
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 130 PKPAQSVQASKPVAAALTPTSSDLNDQITKQGDLVRSLKAAKA 258
P P +Q +P AAA + ++ L + +T +GD + AA A
Sbjct: 28 PPPQVVLQVDRPAAAAPSAAANTLLEGVTSEGDSALHVVAAAA 70
>06_03_1184 -
28255999-28256079,28256181-28256222,28257662-28257717,
28257831-28257843
Length = 63
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 211 ITKQGDLVRSLKAAKAEKTKVDEAVKVLLELK 306
++KQG + LKA KAEK + DE+ L+ K
Sbjct: 1 MSKQGGKAKPLKAPKAEKKEYDESDLAYLQKK 32
>09_04_0588 -
18789971-18790000,18790334-18790507,18791470-18791954,
18792912-18793266
Length = 347
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +3
Query: 126 YAETSSERSSEQAGGRGADSNLVRFERPDHKTGR 227
Y ++ E GG G D +V F P+H+ R
Sbjct: 27 YCSGQHQQRGEDGGG-GGDGEMVHFSHPEHRLAR 59
>03_05_0026 +
19966616-19966703,19967992-19968058,19968599-19968677,
19969140-19969231,19969961-19970396,19973749-19974099
Length = 370
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +1
Query: 166 VAAALTPTSSDLNDQITKQGDLVRSLKAAKAEKTKVDEAVKVLLELKAKYKT 321
V ++ P S +ND + +V LK A T ++ A K+L L+ KY+T
Sbjct: 146 VTFSMLPHES-VNDMYGRLNVIVNDLKGLGATYTDLEVAQKMLRSLQEKYET 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.129 0.372
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,931,940
Number of Sequences: 37544
Number of extensions: 294457
Number of successful extensions: 1044
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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