Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2k08
(764 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75714-3|CAB00060.1| 1149|Caenorhabditis elegans Hypothetical pr... 67 1e-11
U00037-4|AAU20840.1| 454|Caenorhabditis elegans Prolyl trna syn... 35 0.055
U00037-3|AAA50660.1| 581|Caenorhabditis elegans Prolyl trna syn... 35 0.055
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 34 0.13
U23412-2|AAN65294.1| 678|Caenorhabditis elegans Glycyl trna syn... 32 0.51
U23412-1|AAK21465.2| 742|Caenorhabditis elegans Glycyl trna syn... 32 0.51
AF025472-3|AAB71075.2| 843|Caenorhabditis elegans Hypothetical ... 31 1.2
Z83221-5|CAB05706.2| 578|Caenorhabditis elegans Hypothetical pr... 30 1.6
U23178-4|AAK68300.1| 606|Caenorhabditis elegans Vh1 dual-specif... 30 1.6
AF003135-9|AAK18985.3| 1146|Caenorhabditis elegans Guanylyl cycl... 29 2.7
>Z75714-3|CAB00060.1| 1149|Caenorhabditis elegans Hypothetical protein
ZC434.5 protein.
Length = 1149
Score = 67.3 bits (157), Expect = 1e-11
Identities = 63/225 (28%), Positives = 81/225 (36%), Gaps = 13/225 (5%)
Frame = +1
Query: 127 TPKPAQSVQASKPVAAALTPTSSD---LNDQITKQGDLVRSLKAAKAEKTKVDEAVKVLL 297
T K A+ PV+AA + SD L + I +QG +VR LK A+ +A+ LL
Sbjct: 706 TGKEAEKPPKGAPVSAAASSGGSDALQLYNSIEQQGGIVRDLKTKDAKSQATKDAIAKLL 765
Query: 298 ELKAKYKTATGQDWK---XXXXXXXXXXXXXXXXXXXXLDQQITKQGDLVRSLKTSKAEK 468
+LK KYK TG D K + I QG LVR LK A+
Sbjct: 766 DLKKKYKELTGSDHKPGAPPSAPAPTTPSSSESNSALNIYNLIEAQGLLVRELKGKDAKS 825
Query: 469 SKIDXXXXXXXXXXXXXXXXTGQDWKPG-----SXXXXXXXXXXSNDVTALD--RDVTAQ 627
+G D KPG S + ALD + +Q
Sbjct: 826 QATKDAIAKLLELKKQYKEVSGSDHKPGVPPAASVASAPAPAPAAGSTNALDIYHQIESQ 885
Query: 628 GDLVRSLKASKADKAKIDEAVXXXXXXXXXXXXXXGXDWKPGAKP 762
G LVR LK A +A+ G D KPG P
Sbjct: 886 GALVRELKGKDAKSQATKDAIAKLLALKKQYKEVTGSDHKPGVVP 930
Score = 66.5 bits (155), Expect = 2e-11
Identities = 58/211 (27%), Positives = 78/211 (36%), Gaps = 6/211 (2%)
Frame = +1
Query: 136 PAQSV-QASKPVAAALTPTSSDLNDQITKQGDLVRSLKAAKAEKTKVDEAVKVLLELKAK 312
PA SV A P AA + + D+ QI QG LVR LK A+ +A+ LL LK +
Sbjct: 856 PAASVASAPAPAPAAGSTNALDIYHQIESQGALVRELKGKDAKSQATKDAIAKLLALKKQ 915
Query: 313 YKTATGQDWKXXXXXXXXXXXXXXXXXXXXLDQQITKQGDLVRSLKTSKAEKSKIDXXXX 492
YK TG D K + QI QG LVR LK ++ +
Sbjct: 916 YKEVTGSDHK-PGVVPVSAPAPTPLAGGADIAGQIEAQGVLVRDLKNKDSKSQETKDAIA 974
Query: 493 XXXXXXXXXXXXTGQDWKPG-----SXXXXXXXXXXSNDVTALDRDVTAQGDLVRSLKAS 657
TG D+KPG + + L + + Q LVR LK
Sbjct: 975 KLLELKKNYKEVTGSDYKPGPAPAAAPAKVTVPAPSVSGGDTLSKQIDDQALLVRELKMK 1034
Query: 658 KADKAKIDEAVXXXXXXXXXXXXXXGXDWKP 750
A + +A+ G D+KP
Sbjct: 1035 DAKSQETKDAIAKLLQLKKQYKDATGSDYKP 1065
Score = 66.1 bits (154), Expect = 3e-11
Identities = 60/218 (27%), Positives = 78/218 (35%), Gaps = 8/218 (3%)
Frame = +1
Query: 133 KPAQSVQASKPVAAALTPTSSDLN--DQITKQGDLVRSLKAAKAEKTKVDEAVKVLLELK 306
KP A P + + ++S LN + I QG LVR LK A+ +A+ LLELK
Sbjct: 780 KPGAPPSAPAPTTPSSSESNSALNIYNLIEAQGLLVRELKGKDAKSQATKDAIAKLLELK 839
Query: 307 AKYKTATGQDWKXXXXXXXXXXXXXXXXXXXX----LD--QQITKQGDLVRSLKTSKAEK 468
+YK +G D K LD QI QG LVR LK A+
Sbjct: 840 KQYKEVSGSDHKPGVPPAASVASAPAPAPAAGSTNALDIYHQIESQGALVRELKGKDAKS 899
Query: 469 SKIDXXXXXXXXXXXXXXXXTGQDWKPGSXXXXXXXXXXSNDVTALDRDVTAQGDLVRSL 648
TG D KPG + + AQG LVR L
Sbjct: 900 QATKDAIAKLLALKKQYKEVTGSDHKPGVVPVSAPAPTPLAGGADIAGQIEAQGVLVRDL 959
Query: 649 KASKADKAKIDEAVXXXXXXXXXXXXXXGXDWKPGAKP 762
K + + +A+ G D+KPG P
Sbjct: 960 KNKDSKSQETKDAIAKLLELKKNYKEVTGSDYKPGPAP 997
Score = 41.9 bits (94), Expect = 5e-04
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +1
Query: 130 PKPAQSVQASKPVAAALTPTSSD--LNDQITKQGDLVRSLKAAKAEKTKVDEAVKVLLEL 303
P PAQ + AS A A P + L +I +QG +VR K+ + +A+ LL L
Sbjct: 1065 PAPAQ-LAASAAAAPAPAPAFDEAALLKEIEEQGAVVRDAKSKDPKSQDSADAINKLLAL 1123
Query: 304 KAKYKTATGQDW 339
KA +K ATG+D+
Sbjct: 1124 KANFKKATGKDF 1135
>U00037-4|AAU20840.1| 454|Caenorhabditis elegans Prolyl trna
synthetase protein1, isoform b protein.
Length = 454
Score = 35.1 bits (77), Expect = 0.055
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +1
Query: 187 TSSDLNDQITKQGDLVRSLKAAK--AEKTKVDEAVKVLLELKAKYKTATGQDW 339
T ++ +I +QG VR +K K E+ K EA+ LL LK YK TGQ++
Sbjct: 3 TKEEITKEIEEQGAEVRRVKGDKNSTEEAK-KEAIDKLLALKLTYKEVTGQEY 54
>U00037-3|AAA50660.1| 581|Caenorhabditis elegans Prolyl trna
synthetase protein1, isoform a protein.
Length = 581
Score = 35.1 bits (77), Expect = 0.055
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +1
Query: 187 TSSDLNDQITKQGDLVRSLKAAK--AEKTKVDEAVKVLLELKAKYKTATGQDW 339
T ++ +I +QG VR +K K E+ K EA+ LL LK YK TGQ++
Sbjct: 3 TKEEITKEIEEQGAEVRRVKGDKNSTEEAK-KEAIDKLLALKLTYKEVTGQEY 54
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 33.9 bits (74), Expect = 0.13
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +2
Query: 512 PNTRLPPDKIGSQDPRLQQWPPPHRPMTSPLSIVTSPRRETW 637
PNT P K SQDP +QQ PPP P S T R+++
Sbjct: 450 PNT--PTQKASSQDPIVQQDPPPKEPSISSEPTTTKKPRKSF 489
>U23412-2|AAN65294.1| 678|Caenorhabditis elegans Glycyl trna
synthetase protein1, isoform b protein.
Length = 678
Score = 31.9 bits (69), Expect = 0.51
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +1
Query: 154 ASKPVAAALTPTSSDLNDQITKQGDLVRSLKAAKAEKTKVDEAVKVLLELKAK 312
A+ + A L P L + + GDL+R LKA A K +D+AV +ELKA+
Sbjct: 2 ATPEIEAKLAP----LRAAVKEYGDLIRDLKAKGAPKIDIDKAV---VELKAR 47
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 616 VTAQGDLVRSLKASKADKAKIDEAV 690
V GDL+R LKA A K ID+AV
Sbjct: 17 VKEYGDLIRDLKAKGAPKIDIDKAV 41
>U23412-1|AAK21465.2| 742|Caenorhabditis elegans Glycyl trna
synthetase protein1, isoform a protein.
Length = 742
Score = 31.9 bits (69), Expect = 0.51
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +1
Query: 154 ASKPVAAALTPTSSDLNDQITKQGDLVRSLKAAKAEKTKVDEAVKVLLELKAK 312
A+ + A L P L + + GDL+R LKA A K +D+AV +ELKA+
Sbjct: 66 ATPEIEAKLAP----LRAAVKEYGDLIRDLKAKGAPKIDIDKAV---VELKAR 111
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 616 VTAQGDLVRSLKASKADKAKIDEAV 690
V GDL+R LKA A K ID+AV
Sbjct: 81 VKEYGDLIRDLKAKGAPKIDIDKAV 105
>AF025472-3|AAB71075.2| 843|Caenorhabditis elegans Hypothetical
protein ZK250.6 protein.
Length = 843
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Frame = -1
Query: 125 INNYSLGLQFTTKYTEV---KHIFNTTHTHQNS 36
INN+S+G+++T K V + ++NT HT+ N+
Sbjct: 459 INNWSIGVKYTLKLMSVDGQRLLYNTKHTYTNN 491
>Z83221-5|CAB05706.2| 578|Caenorhabditis elegans Hypothetical
protein C49A1.9 protein.
Length = 578
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 19 VFKSVSEFWCVCVV-LKICLTSVYFVVNCKPSE 114
+FK FWC+ V + C+T V V CK SE
Sbjct: 162 LFKRPKGFWCIGVTSVNQCITQVDSVAKCKASE 194
>U23178-4|AAK68300.1| 606|Caenorhabditis elegans Vh1
dual-specificity phosphatasefamily protein 1, isoform b
protein.
Length = 606
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 449 KRLRPKNRKLTRLSRHCWNSKPNTRLPPDKIGSQDP--RLQQWPPPHRPMTSPLSIVTSP 622
KR + KN+K R + + N PNT P++I QDP L +P + L++ +SP
Sbjct: 14 KRKKTKNKKKRRNNNNSKNKTPNTF--PNEIEEQDPVSSLPTFPAKKFGLKLQLTLTSSP 71
>AF003135-9|AAK18985.3| 1146|Caenorhabditis elegans Guanylyl cyclase
protein 17 protein.
Length = 1146
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 467 NRKLTRLSRHCWNSKPNTRLPPDKIGS 547
N L L R CW KP+ R P D++ S
Sbjct: 837 NPALVHLIRDCWTEKPSERPPIDQVRS 863
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.129 0.372
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,048,441
Number of Sequences: 27780
Number of extensions: 242470
Number of successful extensions: 975
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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