Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2k08
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   3.1  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   4.1  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   7.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   7.2  

>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 123 DYAETSSERSSEQAG-GRGADSNLV 194
           +Y ETS ERS ++ G GR  +  ++
Sbjct: 306 EYRETSRERSRDRRGRGRSREHRII 330


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 47  HQNSDTDLKTTTWS 6
           H+NSD DL    WS
Sbjct: 110 HRNSDRDLNIRKWS 123


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +2

Query: 494 HCWNSKPNTRLPPDKIGSQDPRLQQWPPP 580
           HC N  P    P   I  Q PR +   PP
Sbjct: 351 HCGNFPPRPMGPWISIQEQVPRFRYIGPP 379


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 488 SRHCWNSKPNTRLPPDKIGSQDPRLQQWPPPHRPMTSPLSIVTSPRR 628
           +++C ++  + R    KIGS  P    + P  R + SP++     RR
Sbjct: 642 NQNCLDASSSRR--GSKIGSPTPAESTFIPEERRIYSPITFQDVARR 686


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.129    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,198
Number of Sequences: 438
Number of extensions: 3621
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)