Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2k06
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    26   6.2  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.2  
SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.2  

>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 642 DKFLSYALSGLQQLVVWEVE 583
           +KF S  L  LQQLV WE++
Sbjct: 344 EKFPSTILETLQQLVSWEIQ 363


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 484  TVTILVHFCRFIMKKSYQPTLNTN 413
            T  ++VHF +F++KK     +N N
Sbjct: 1160 TAKLIVHFMKFVLKKITSMEVNLN 1183


>SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 319 CSVNMNIWFKGFRTNLNYFI 378
           C +   +W   FRTN+ Y I
Sbjct: 182 CQITPYLWISSFRTNVYYLI 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,713,841
Number of Sequences: 5004
Number of extensions: 51291
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)