Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2k06
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0913 + 8995491-8995926,8995976-8997352,8997431-8998174,899...    29   2.8  
08_01_0914 + 9010613-9013316,9013537-9013748                           29   4.9  
08_01_0915 + 9019499-9020971                                           28   6.4  

>08_01_0913 +
           8995491-8995926,8995976-8997352,8997431-8998174,
           8998402-8998748
          Length = 967

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = -2

Query: 506 TSSNQMLHGDDFSSLLSFHNEKVLPTDPK 420
           T+S+Q ++GDD S+LLSF  + ++  DP+
Sbjct: 23  TASSQSINGDDLSALLSF--KSLIRNDPR 49


>08_01_0914 + 9010613-9013316,9013537-9013748
          Length = 971

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/29 (41%), Positives = 22/29 (75%)
 Frame = -2

Query: 506 TSSNQMLHGDDFSSLLSFHNEKVLPTDPK 420
           T+S+Q ++GDD S+L+SF  + ++  DP+
Sbjct: 21  TASSQTINGDDLSALMSF--KSLIRNDPR 47


>08_01_0915 + 9019499-9020971
          Length = 490

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/29 (41%), Positives = 22/29 (75%)
 Frame = -2

Query: 506 TSSNQMLHGDDFSSLLSFHNEKVLPTDPK 420
           T+++Q ++GDD S+LLSF  + ++  DP+
Sbjct: 21  TATSQTINGDDLSALLSF--KSLIRNDPR 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,441,530
Number of Sequences: 37544
Number of extensions: 288049
Number of successful extensions: 505
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)