Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2k06
         (717 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X54251-1|CAA38152.1| 1596|Drosophila melanogaster nuclear protei...    45   1e-04
BT023751-1|AAZ41759.1| 1594|Drosophila melanogaster RH56202p pro...    45   1e-04
AE013599-1817|AAF58300.2| 1594|Drosophila melanogaster CG8118-PB...    45   1e-04
AE013599-1816|AAF58299.1| 1594|Drosophila melanogaster CG8118-PA...    45   1e-04

>X54251-1|CAA38152.1| 1596|Drosophila melanogaster nuclear protein
           protein.
          Length = 1596

 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 19/44 (43%), Positives = 26/44 (59%)
 Frame = +3

Query: 585 LPPKRQAVVDXXXXXXXXXXXXQSECVPRFDQSFSGACEQQNLE 716
           +P KR  VVD            Q++CVPR++Q+F+  CEQQN E
Sbjct: 124 MPTKRMPVVDRLRRRMENYRRRQTDCVPRYEQAFNTVCEQQNQE 167


>BT023751-1|AAZ41759.1| 1594|Drosophila melanogaster RH56202p
           protein.
          Length = 1594

 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 19/44 (43%), Positives = 26/44 (59%)
 Frame = +3

Query: 585 LPPKRQAVVDXXXXXXXXXXXXQSECVPRFDQSFSGACEQQNLE 716
           +P KR  VVD            Q++CVPR++Q+F+  CEQQN E
Sbjct: 124 MPTKRMPVVDRLRRRMENYRRRQTDCVPRYEQAFNTVCEQQNQE 167


>AE013599-1817|AAF58300.2| 1594|Drosophila melanogaster CG8118-PB,
           isoform B protein.
          Length = 1594

 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 19/44 (43%), Positives = 26/44 (59%)
 Frame = +3

Query: 585 LPPKRQAVVDXXXXXXXXXXXXQSECVPRFDQSFSGACEQQNLE 716
           +P KR  VVD            Q++CVPR++Q+F+  CEQQN E
Sbjct: 124 MPTKRMPVVDRLRRRMENYRRRQTDCVPRYEQAFNTVCEQQNQE 167


>AE013599-1816|AAF58299.1| 1594|Drosophila melanogaster CG8118-PA,
           isoform A protein.
          Length = 1594

 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 19/44 (43%), Positives = 26/44 (59%)
 Frame = +3

Query: 585 LPPKRQAVVDXXXXXXXXXXXXQSECVPRFDQSFSGACEQQNLE 716
           +P KR  VVD            Q++CVPR++Q+F+  CEQQN E
Sbjct: 124 MPTKRMPVVDRLRRRMENYRRRQTDCVPRYEQAFNTVCEQQNQE 167


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,302,090
Number of Sequences: 53049
Number of extensions: 515463
Number of successful extensions: 890
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3190721655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)