Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2k05
(716 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe... 91 1e-19
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|... 64 3e-11
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S... 38 0.002
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 27 2.7
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 27 3.5
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 3.5
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 3.5
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 27 3.5
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 26 4.7
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 26 4.7
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo... 26 6.2
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ... 25 8.2
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 25 8.2
>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 310
Score = 91.1 bits (216), Expect = 1e-19
Identities = 66/189 (34%), Positives = 93/189 (49%), Gaps = 6/189 (3%)
Frame = +3
Query: 114 KFVIDNDAGGDDAMAIFLAALFEKYHAGPQLIGVTTSNGNTNEDNVSYNNQRILKVAKRQ 293
K +ID D G DDA+ LA + +L+GVTT GN + N ++L +A R
Sbjct: 2 KIIIDTDPGQDDAITALLAIASPEI----ELLGVTTVAGNVPVSMTTRNALQMLDLAGRP 57
Query: 294 DVPIYRGSKSSLVKTPEITDYFGKDGLGDSGDVYPDLVPPHTEN---AVNALIQLSKTHE 464
D+P+Y GS L++ P IT G G V P P EN AV+ +I + +E
Sbjct: 58 DIPVYAGSNKPLLRAP-ITATHVHGASGFEGAVLPP--PSRKENEGHAVDFIIDTLRNNE 114
Query: 465 -GNLTIITIGALTNLALAIKTDPAFLGRLAHVYIGAGHIHT--EEYPTAEFNAHMDVEAY 635
G +TI TIG LTN+ALA+ P + R + + AG P AEFN ++D A
Sbjct: 115 PGTITICTIGPLTNIALALNKAPEVIQRAKQIVMMAGAFSEVGNITPAAEFNIYVDPHAA 174
Query: 636 HVVTENANP 662
+V + P
Sbjct: 175 QMVLSSGIP 183
>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 330
Score = 63.7 bits (148), Expect = 3e-11
Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 3/179 (1%)
Frame = +3
Query: 123 IDNDAGGDDAMAIFLAALFEKYHAGPQLIGVTTSNGNTNEDNVSYNNQRILKVAKRQDVP 302
ID D G DD +A+ LAA H +++GV+T +GNT + + N ++++ QDV
Sbjct: 21 IDCDPGHDDVVALTLAAC--AGHC--KILGVSTVHGNTTLEFTTKNALAVMELL-NQDVD 75
Query: 303 IYRGSKSSLVKTPEI-TDYFGKDGLGDSGDVYPDLVPPH-TENAVNALIQLSKTHEGNLT 476
++ G+ L++ T G +GL + PD T +AV A+ + +T
Sbjct: 76 VHAGAAKPLMRESAFATHIHGTNGLAGI-SLLPDYPKKKATPDAVFAMYTTISNYPEPVT 134
Query: 477 IITIGALTNLALAIKTDPAFLGRLAH-VYIGAGHIHTEEYPTAEFNAHMDVEAYHVVTE 650
++ G LTN+AL + T P+ + +++G AEFN + D EA +V E
Sbjct: 135 LVATGPLTNIALLLATYPSVTDNIERFIFMGGSTGIGNITSQAEFNVYADPEAARLVLE 193
>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 389
Score = 37.5 bits (83), Expect = 0.002
Identities = 45/187 (24%), Positives = 76/187 (40%), Gaps = 14/187 (7%)
Frame = +3
Query: 69 LILSRYCECMTGIKRKFVIDNDAGGDDAMAIFLAALFEKYHAGPQLIGVTTSNGNTNEDN 248
L+ S C K +IDND G D +F AL A Q++GVT G+ D+
Sbjct: 11 LLGSIICAYAASAASKVIIDND-GLTDLQVLF--AL----QAKQQILGVTAIYGDYTLDD 63
Query: 249 VSYNNQRILKVAK-RQDVPIYRGSKSSLVKTPEITDYFGKDGLGD---SGDVYPDLVPPH 416
+ +L +P + G+ L++T T ++ G G P+ +
Sbjct: 64 SLFLASDVLSTGNLTYCIPSFAGAAQPLLRTNN-TFQIWQELYGSYVWQGYWQPEYETAN 122
Query: 417 TEN----------AVNALIQLSKTHEGNLTIITIGALTNLALAIKTDPAFLGRLAHVYIG 566
T N A +I + K + +TI+ G +TNLA+A+ P + I
Sbjct: 123 TNNESYIYNTQISAAQFIIDMVKANPNEITIVAAGPMTNLAIALSIWPDLAKNTKSLVIM 182
Query: 567 AGHIHTE 587
G++ ++
Sbjct: 183 GGYVDSQ 189
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 342 EITDYFGKDGLGDSGDVYPDLVPPHTENA 428
E+ ++F DGL D G P + PP +A
Sbjct: 61 EMREFFNFDGLPDQGLNLPSIAPPSLSHA 89
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 26.6 bits (56), Expect = 3.5
Identities = 27/121 (22%), Positives = 50/121 (41%)
Frame = +3
Query: 198 PQLIGVTTSNGNTNEDNVSYNNQRILKVAKRQDVPIYRGSKSSLVKTPEITDYFGKDGLG 377
PQL+ + S N +E +S + ++ R+ I+ +L+K P F L
Sbjct: 2027 PQLLKLLESE-NQSEQALS----ALREIISRRSSTIFPVLIPTLIKKP--VSAFNARALS 2079
Query: 378 DSGDVYPDLVPPHTENAVNALIQLSKTHEGNLTIITIGALTNLALAIKTDPAFLGRLAHV 557
V + + +NAL++ S G+ + GA+ + L++K +AH
Sbjct: 2080 SLAQVAGVTLNKRLPSILNALMESSLASTGDDLVALNGAIDKVNLSVKDQEGLQILMAHF 2139
Query: 558 Y 560
Y
Sbjct: 2140 Y 2140
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 26.6 bits (56), Expect = 3.5
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 453 KTHEGNLTIITI-GALTNLALAIKTDPAFLGRLAHVYIGAGHI 578
+T +L I+T ALTN L A LGRLA V I H+
Sbjct: 1284 ETQLPDLFILTYESALTNSGLRFFESLATLGRLARVVIDEAHL 1326
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 26.6 bits (56), Expect = 3.5
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 453 KTHEGNLTIITI-GALTNLALAIKTDPAFLGRLAHVYIGAGHI 578
+T +L I+T ALTN L A LGRLA V I H+
Sbjct: 1284 ETQLPDLFILTYESALTNSGLRFFESLATLGRLARVVIDEAHL 1326
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 26.6 bits (56), Expect = 3.5
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +3
Query: 255 YNNQRILKVAKRQDVPIYRGSKSSLVKTPEITDYFGKDGLGDSGDVYPDLVPPHTENAVN 434
+N Q LKV D P+Y +++ ++ + Y + L + V DL+ A+N
Sbjct: 468 HNQQASLKVMHSYDPPLYNDTRAWMIYEENLPSYLSSNFLKEEPVVLFDLL-----RALN 522
Query: 435 ALIQLSKTH--EGNLTI 479
+ + K+ EGN+ I
Sbjct: 523 DPVFVKKSFCTEGNIGI 539
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 26.2 bits (55), Expect = 4.7
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = +3
Query: 6 DNCLLTKIDMSVKL--SYTLFSILILS-RYCECMTGIKRKFVIDNDAGGDDA 152
D LL K+ KL +Y F S C+CM+ I+ F I GG A
Sbjct: 28 DEALLQKMGYKPKLHRTYAFFENFASSFAACDCMSNIRGSFYIGLLTGGPSA 79
>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 449
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -2
Query: 712 KLQYFCTCEKGNIVTFSGFA-FSVTTW 635
K + C+KGN+V GF+ FS+ W
Sbjct: 105 KQDFLNDCKKGNLVREDGFSIFSILRW 131
>SPAC26H5.07c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 505
Score = 25.8 bits (54), Expect = 6.2
Identities = 7/24 (29%), Positives = 15/24 (62%)
Frame = -1
Query: 302 WHVLSFGDLQYSLVIVRNVVFVGV 231
W V+ FG + Y+ ++ N + +G+
Sbjct: 364 WIVICFGIVAYASIVAANAILIGI 387
>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1012
Score = 25.4 bits (53), Expect = 8.2
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = +3
Query: 363 KDGLGDSGDVYPD----LVPPHTENAVNALIQLSKTHEGNL 473
++ L D VYPD + PP A AL + HEG+L
Sbjct: 269 RESLKDPEYVYPDFGKMMRPPQYHIAFQALSAFADAHEGSL 309
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1220
Score = 25.4 bits (53), Expect = 8.2
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = +3
Query: 429 VNALIQLSKTHEGNLTIITIGALTNLALAIKTD 527
++ + ++KTH T +T G++ + KTD
Sbjct: 65 ISTIYPVNKTHHTEYTTLTDGSIDTYTITAKTD 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,894,875
Number of Sequences: 5004
Number of extensions: 59722
Number of successful extensions: 181
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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