Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2k05
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-5|AAN65330.1|  374|Caenorhabditis elegans Hypothetical pr...    93   2e-19
AL032637-12|CAA21614.1|  338|Caenorhabditis elegans Hypothetical...    87   9e-18
Z32683-1|CAA83621.1|  812|Caenorhabditis elegans Hypothetical pr...    32   0.47 
Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex determina...    30   1.9  
X59156-9|CAB56747.1|  108|Caenorhabditis elegans transposase pro...    29   2.5  
U39995-5|AAF99994.4|  250|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    28   7.7  
AF040655-8|AAB95047.1|  632|Caenorhabditis elegans Hypothetical ...    28   7.7  

>U23139-5|AAN65330.1|  374|Caenorhabditis elegans Hypothetical
           protein F13H8.3 protein.
          Length = 374

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 62/189 (32%), Positives = 101/189 (53%), Gaps = 12/189 (6%)
 Frame = +3

Query: 114 KFVIDNDAGGDDAMAIFLAALFEKYHAGPQLIGVTTSNGNTNEDNVSYNNQRILKVAKRQ 293
           K +ID D   DD   + +A   +      ++I +TT +G    +  + N  R+L+   + 
Sbjct: 24  KLIIDTDGVYDDIRGLTIALTNQNV----EVIAITTVHGGVTANQSAANVARLLRAIGKH 79

Query: 294 DVPIYRGSKSSLVKTPEI---TDYFGKDGLGDSGDVYPDLVP-----PHTENAVNALIQL 449
           +VP++ G++ SLV    I    + FG DG+G   DV P  +P         NAV+A+I L
Sbjct: 80  NVPVFIGAQDSLVPKGPIQVWEELFGSDGIGGVPDVEPKTLPSDFNSAQVGNAVDAIINL 139

Query: 450 SKTHEGNLTIITIGALTNLALAIKTDPAFLGRLAHVYIGAGHI----HTEEYPTAEFNAH 617
           +K+ + ++ ++ +G LTN+A+AI+ DP    R+  V I  G+     +T+   TAEFN  
Sbjct: 140 TKSTK-DIILVGLGPLTNIAMAIRKDPDISKRVKQVVIMGGNYLGVGNTQFNSTAEFNFL 198

Query: 618 MDVEAYHVV 644
           MD EA H+V
Sbjct: 199 MDPEAAHIV 207


>AL032637-12|CAA21614.1|  338|Caenorhabditis elegans Hypothetical
           protein Y43F8C.13 protein.
          Length = 338

 Score = 87.4 bits (207), Expect = 9e-18
 Identities = 62/208 (29%), Positives = 106/208 (50%), Gaps = 11/208 (5%)
 Frame = +3

Query: 96  MTGIKRKFVIDNDAGGDDAMAIFLAALFEKYHAGPQLIGVTTSNGNTNEDNVSYNNQRIL 275
           MT  K K VID+D   DD  AI LA      H   +++  T  +G    D    N +R +
Sbjct: 1   MTVDKVKLVIDSDGVSDDVRAISLAL----QHPKAEILAFTAVHGCVTVDQACANIKRTI 56

Query: 276 KVAKRQDVPIYRGSKSSLVKTPE---ITDYFGKDGLGDSGDVYPDLVPPHTE----NAVN 434
           +   R ++P+Y+G+  S++  P+   ++D+FG DG+GD  + +P +     E    +A  
Sbjct: 57  RANDRSNIPVYKGAAKSILSLPKDDTVSDFFGIDGIGDKPEEFPKVERSDFEGEGKHASL 116

Query: 435 ALIQLSKTHEGNLTIITIGALTNLALAIKTDPAFLGRLAHVYIGAGHIH----TEEYPTA 602
           ALI + + +  + T++TIG LTN+A+A++    F    + + I  G+ +     +   +A
Sbjct: 117 ALIDILRENR-DATLVTIGPLTNVAIALQLCEEFSTYPSRLVIMGGNYYAVGNVDGGSSA 175

Query: 603 EFNAHMDVEAYHVVTENANPEKVTIFPF 686
           E+N H D EA  +V        +TI P+
Sbjct: 176 EYNFHGDPEAASIVLRRMKC-PITIVPW 202


>Z32683-1|CAA83621.1|  812|Caenorhabditis elegans Hypothetical
           protein R07E5.1 protein.
          Length = 812

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +3

Query: 279 VAKRQDVPI-YRGSKSSLVKTPEITDYFGKDGLGDSGDVYPDLVPPHTENAVNALIQLSK 455
           +AKR +VP  Y GS +  V   + TD+  KD L D G V   L  P+T N +    +L K
Sbjct: 535 LAKRFNVPHPYPGSDTVGVPALQKTDWKRKDRLADIGGVSATLGLPNTANEIEMRERLLK 594

Query: 456 T 458
           +
Sbjct: 595 S 595


>Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical
           protein K03H1.2 protein.
          Length = 1131

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 264 QRILKVAKRQDVPIYRGSKSSLVKTPEITDYFGKDGLGDSG 386
           Q+++ V +  +V I  G   S  KT ++  Y  +DG GDSG
Sbjct: 448 QKMMNVIRENNVVIIVGETGS-GKTTQLAQYLLEDGFGDSG 487


>AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex
           determination protein MOG-1 protein.
          Length = 1131

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 264 QRILKVAKRQDVPIYRGSKSSLVKTPEITDYFGKDGLGDSG 386
           Q+++ V +  +V I  G   S  KT ++  Y  +DG GDSG
Sbjct: 448 QKMMNVIRENNVVIIVGETGS-GKTTQLAQYLLEDGFGDSG 487


>X59156-9|CAB56747.1|  108|Caenorhabditis elegans transposase
           protein.
          Length = 108

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -1

Query: 440 KSVDGIFCMRRYQIWVDIPTVSEAVFTEVVRDFRGFHQRGFRTSINWHVL 291
           ++V+ I   R   +W    TV+  +FT +  D +G   +GF+  I W ++
Sbjct: 49  RAVEKIQTRRNRSVWCK--TVNLIIFTSICSDCQGASFKGFQYQILWKII 96


>U39995-5|AAF99994.4|  250|Caenorhabditis elegans Hypothetical
           protein M60.6 protein.
          Length = 250

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = +3

Query: 399 DLVPPHTENAVNAL-IQLSKTHEGNLTIITIGALTNLALAIKTDPAFLGRLAHVYIGAGH 575
           D  PPH  NA+ ++ +QLS   EG L+  T   + +L  A+     FLG +  V  G   
Sbjct: 8   DSSPPH--NALTSIRLQLSHLKEGRLSETTTVKMLSLLKALANVHVFLGIIMIVLSGLAD 65

Query: 576 IHTEEYPTAEFNAHMDVEAYHVV 644
             +    T   +   ++ +++ V
Sbjct: 66  YASTRINTIRLHGLEEICSFYFV 88


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +1

Query: 193  PVLN*LELRQATVTPTKTTFLTITREY*RSPKD 291
            PVL+  E R+  VT   TT  T+TREY   P+D
Sbjct: 2816 PVLSEKE-REHQVTSETTTTTTVTREYNDEPED 2847


>AF040655-8|AAB95047.1|  632|Caenorhabditis elegans Hypothetical
           protein T24E12.10 protein.
          Length = 632

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
 Frame = +3

Query: 333 KTPEITDYFGKDGLGDSGD--VYPDLVPPHTE----NAVNALIQLSKTHEGNLTIITIGA 494
           ++PE+ DY  +DG  D  D  + P  +   T+     A +A   +S  +E +L   +  A
Sbjct: 464 QSPEVRDYVNEDG-HDFCDSLIKPKELSQSTKVREAQAEDAAPSVSPNYEASLA--SDEA 520

Query: 495 LTNLALAIKTDPAFLGRLAHVYIGAGHIHTEEYPTAEFNAHMDVEAYHVVTENANPEK 668
           L  + + ++ D  F    A          T + P  +++  +D EA+H+ T++  P K
Sbjct: 521 LCEIVVEVQEDRQFSSSPASHDAPIEQQETSQSPENQYD--IDEEAHHLSTQSVAPVK 576


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,086,731
Number of Sequences: 27780
Number of extensions: 335430
Number of successful extensions: 957
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)