Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2k02
         (809 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1HQ21 Cluster: Methylated DNA-protein cysteine methylt...    54   6e-06
UniRef50_UPI0000D573D5 Cluster: PREDICTED: similar to Choline tr...    38   0.23 
UniRef50_UPI00006CB6ED Cluster: hypothetical protein TTHERM_0049...    36   1.6  
UniRef50_Q1IIT8 Cluster: Glycosyl transferase, family 39 precurs...    35   2.8  
UniRef50_A5BII0 Cluster: Putative uncharacterized protein; n=4; ...    34   4.9  
UniRef50_A0DL39 Cluster: Chromosome undetermined scaffold_55, wh...    33   6.4  
UniRef50_UPI0000E469BD Cluster: PREDICTED: similar to midasin, p...    33   8.5  
UniRef50_A3DI43 Cluster: HD superfamily phosphohydrolases-like p...    33   8.5  
UniRef50_A5C283 Cluster: Putative uncharacterized protein; n=2; ...    33   8.5  

>UniRef50_Q1HQ21 Cluster: Methylated DNA-protein cysteine
           methyltransferase; n=1; Bombyx mori|Rep: Methylated
           DNA-protein cysteine methyltransferase - Bombyx mori
           (Silk moth)
          Length = 136

 Score = 53.6 bits (123), Expect = 6e-06
 Identities = 25/30 (83%), Positives = 26/30 (86%)
 Frame = +2

Query: 110 VSSYFV*FTSNTANVNPSHNTAVCIQKLQK 199
           + S F  FTSNTANVNPSHNTAVCIQKLQK
Sbjct: 107 LGSDFQKFTSNTANVNPSHNTAVCIQKLQK 136


>UniRef50_UPI0000D573D5 Cluster: PREDICTED: similar to Choline
           transporter-like protein 1 (Solute carrier family 44
           member 1); n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to Choline transporter-like protein 1 (Solute
           carrier family 44 member 1) - Tribolium castaneum
          Length = 1390

 Score = 38.3 bits (85), Expect = 0.23
 Identities = 19/45 (42%), Positives = 24/45 (53%)
 Frame = +3

Query: 135 LQTQPMSTRLTIPQCVFKSCKNKARKSNLTAGISYFRFPSNHVCR 269
           LQT  +S R T+PQC    C +  RK+     I Y RFP + V R
Sbjct: 296 LQTTNLSPRATMPQCAVMGCNSSHRKTK-GGSIRYHRFPGDAVTR 339


>UniRef50_UPI00006CB6ED Cluster: hypothetical protein
           TTHERM_00494200; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00494200 - Tetrahymena
           thermophila SB210
          Length = 523

 Score = 35.5 bits (78), Expect = 1.6
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +2

Query: 533 HFQNIKSKQLNFYFNSLINYFSVKRDSLTSCSK*K-SAFQEAKINKAKR 676
           + QN     LNFY +  INYF +K++SL   S+ + S FQ+ +  + K+
Sbjct: 298 YLQNKMVVHLNFYLSLQINYFKLKKESLNQLSEDEDSQFQQREFRERKQ 346


>UniRef50_Q1IIT8 Cluster: Glycosyl transferase, family 39 precursor;
           n=1; Acidobacteria bacterium Ellin345|Rep: Glycosyl
           transferase, family 39 precursor - Acidobacteria
           bacterium (strain Ellin345)
          Length = 557

 Score = 34.7 bits (76), Expect = 2.8
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
 Frame = -3

Query: 477 VIYIFKFSRPVHIIKQRLN-GFKRGIFITMFRPRFSS-----REHGRQRCPVSINGDISW 316
           ++  F  + P ++  Q  N GF R  FIT    RF++     R+H     PV I G + W
Sbjct: 214 ILIFFAIALPWYVAVQHANPGFVREFFITHNLSRFTTNRFQHRQHFWYYIPVLIGGTMPW 273

Query: 315 LIKVISCFSG 286
            + VI+  +G
Sbjct: 274 TVFVIAALAG 283


>UniRef50_A5BII0 Cluster: Putative uncharacterized protein; n=4;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 832

 Score = 33.9 bits (74), Expect = 4.9
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +3

Query: 102 LEM*ALILFSSLQTQPMSTRLTIPQCVFKSCKNKARKSNLTAGISY--FRFPSNHVCRMD 275
           L M AL      +T   +T+L + +C  K CK + R + L     +   +F S H CR+D
Sbjct: 254 LHMMALKRKFEFKTTKSTTKLLLVECFDKECKWQVRATKLGISNMFQIMKFYSTHTCRLD 313

Query: 276 LDCR 287
           +  R
Sbjct: 314 MMSR 317


>UniRef50_A0DL39 Cluster: Chromosome undetermined scaffold_55, whole
            genome shotgun sequence; n=2; Alveolata|Rep: Chromosome
            undetermined scaffold_55, whole genome shotgun sequence -
            Paramecium tetraurelia
          Length = 2875

 Score = 33.5 bits (73), Expect = 6.4
 Identities = 20/49 (40%), Positives = 29/49 (59%)
 Frame = -3

Query: 564  FSCLLFMFWKCMFVSIYTLLIILLALRFCVIYIFKFSRPVHIIKQRLNG 418
            FS L  ++ +  F  I  +LIILL L+ C  ++F  SR V+I K R+ G
Sbjct: 2732 FSSLCSLY-QVFFSVILQVLIILLCLKLCFPFVFDISR-VYIRKYRIQG 2778


>UniRef50_UPI0000E469BD Cluster: PREDICTED: similar to midasin,
           partial; n=1; Strongylocentrotus purpuratus|Rep:
           PREDICTED: similar to midasin, partial -
           Strongylocentrotus purpuratus
          Length = 257

 Score = 33.1 bits (72), Expect = 8.5
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -3

Query: 378 FSSREHGRQRCPVSINGDISWLIKVISCFSGDNRDPFCTRD 256
           F+S E GR +C +SI   +SW+  +  C    NRDP  + D
Sbjct: 52  FASSEVGR-KCTISIRDILSWVNFINVCCDPSNRDPMTSPD 91


>UniRef50_A3DI43 Cluster: HD superfamily phosphohydrolases-like
           protein; n=1; Clostridium thermocellum ATCC 27405|Rep:
           HD superfamily phosphohydrolases-like protein -
           Clostridium thermocellum (strain ATCC 27405 / DSM 1237)
          Length = 593

 Score = 33.1 bits (72), Expect = 8.5
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -3

Query: 489 LRFCVIYIFKFSRPVHIIKQRLNGFKRGIFITMFRPRFSSREHGRQR 349
           ++F     F F+  +H+ +Q  NG K+ + +T+F P   S  H  ++
Sbjct: 503 IKFLENQAFPFTSELHVAQQEKNGQKKKVPVTVFSPYLQSMAHASEK 549


>UniRef50_A5C283 Cluster: Putative uncharacterized protein; n=2;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 610

 Score = 33.1 bits (72), Expect = 8.5
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +3

Query: 102 LEM*ALILFSSLQTQPMSTRLTIPQCVFKSCKNKARKSNLTAGISY--FRFPSNHVCRMD 275
           L M AL +    +T   +T+L + +C  K CK + R + L     +   ++ S H CR+D
Sbjct: 246 LYMMALKMKFEFKTTKSTTKLLLVECFDKECKWRVRATKLEIFNMFQIMKYYSTHTCRLD 305

Query: 276 LDCR 287
           +  R
Sbjct: 306 MMSR 309


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 671,726,572
Number of Sequences: 1657284
Number of extensions: 12306584
Number of successful extensions: 27351
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 26311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27325
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69966202150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)