Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2k02
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    29   1.0  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    28   1.4  
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ...    28   1.4  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    25   9.6  

>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +2

Query: 461 LKIYITQKRNANKIISNV*ILTNIHFQNIKSKQLNFYFNSLINYFSVKRDSLTSCSK*K 637
           +KIY T K    K+++   + TN+    I  + + FY  +  N FSV+   L S S+ K
Sbjct: 217 VKIYATDKNFEQKVVAEFNVATNVEGYFIIDEVIPFY-TTKNNKFSVEAVLLQSTSEDK 274


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 138  QTQPMSTRLTIPQCVFKSCKNKARKSNLTAGISYFRFPSNH 260
            Q Q  S    I   + +SC +K R   LTA  +  R+PS+H
Sbjct: 1955 QFQSKSPECVIISTMNRSCDSKCRYFLLTAIANQLRYPSSH 1995


>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 343

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 707 TFPLIALRTNIVLLYLFLLLEMPISIYYR 621
           T P + + TN+  LY  +L+E P++ Y++
Sbjct: 133 TLPALCVATNVEELYSVVLIETPLAPYFK 161


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 349 SLPSVLTATETWPKHCNKNTTLETV*TLFYYVHWSRKLK 465
           S+ +V T  +TWPK  N +     + +L     WS K K
Sbjct: 228 SVTAVTTLAQTWPKLLNLSLANNRITSLSDLDPWSPKTK 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,939,605
Number of Sequences: 5004
Number of extensions: 57103
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)