Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2k02
         (809 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical...    30   1.7  
Z19158-6|CAA79575.2|  615|Caenorhabditis elegans Hypothetical pr...    29   5.2  
Z19156-3|CAA79564.2|  615|Caenorhabditis elegans Hypothetical pr...    29   5.2  
AF079899-1|AAC83661.1|  615|Caenorhabditis elegans sodium- and c...    29   5.2  
AF025452-7|AAB70941.2|  335|Caenorhabditis elegans Serpentine re...    29   5.2  
U53155-9|AAC48273.1|  328|Caenorhabditis elegans Seven tm recept...    28   6.9  

>Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical protein
            W04A8.7 protein.
          Length = 1792

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +2

Query: 212  KQFNGRNILLSLS*QSRVQ-NGSRLSPEKQEMTFISQLISPFIDTGHL 352
            + +NG N +L+L+ Q  +Q  G R+   +Q+   + + I+P +DT  L
Sbjct: 1533 RMYNGDNNILTLTAQQMLQLAGKRMIEREQKFIGLEKQINPLLDTNDL 1580


>AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical
            protein W04A8.7 protein.
          Length = 1792

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +2

Query: 212  KQFNGRNILLSLS*QSRVQ-NGSRLSPEKQEMTFISQLISPFIDTGHL 352
            + +NG N +L+L+ Q  +Q  G R+   +Q+   + + I+P +DT  L
Sbjct: 1533 RMYNGDNNILTLTAQQMLQLAGKRMIEREQKFIGLEKQINPLLDTNDL 1580


>Z19158-6|CAA79575.2|  615|Caenorhabditis elegans Hypothetical
           protein T23G5.5 protein.
          Length = 615

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -3

Query: 555 LLFMFWKCMFVSIYTLLIILLALRFCVIYIFKFSRPVHIIKQRLNGFKRG 406
           +L M W  ++ + + LLI +      + YI+   + VH +K+ + GF+ G
Sbjct: 462 ILIMEWLIIYGTTWGLLIAVFCEAMVIAYIYGLRQFVHDVKEMM-GFRPG 510


>Z19156-3|CAA79564.2|  615|Caenorhabditis elegans Hypothetical
           protein T23G5.5 protein.
          Length = 615

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -3

Query: 555 LLFMFWKCMFVSIYTLLIILLALRFCVIYIFKFSRPVHIIKQRLNGFKRG 406
           +L M W  ++ + + LLI +      + YI+   + VH +K+ + GF+ G
Sbjct: 462 ILIMEWLIIYGTTWGLLIAVFCEAMVIAYIYGLRQFVHDVKEMM-GFRPG 510


>AF079899-1|AAC83661.1|  615|Caenorhabditis elegans sodium- and
           chloride-dependentantidepressant- and cocaine-sensitive
           dopamine transporterprotein.
          Length = 615

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -3

Query: 555 LLFMFWKCMFVSIYTLLIILLALRFCVIYIFKFSRPVHIIKQRLNGFKRG 406
           +L M W  ++ + + LLI +      + YI+   + VH +K+ + GF+ G
Sbjct: 462 ILIMEWLIIYGTTWGLLIAVFCEAMVIAYIYGLRQFVHDVKEMM-GFRPG 510


>AF025452-7|AAB70941.2|  335|Caenorhabditis elegans Serpentine
           receptor, class i protein28 protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 520 YLYITYYFISVTFLCNIYF*VFATSAHNKTTFKRFQAWYFYY 395
           ++YI  Y   ++F C I F +F   A  +  +K  Q  Y  Y
Sbjct: 136 WIYILTYIFCLSFSCLISFSIFIADATKEDQYKELQEHYPEY 177


>U53155-9|AAC48273.1|  328|Caenorhabditis elegans Seven tm receptor
           protein 138 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = -3

Query: 534 CMFVSIYTLLIILLALRFCVIYIFKFSRPVHIIKQRLNGFK 412
           C++ + Y++LI LLA +F   Y+    +P H+ K  LNG K
Sbjct: 89  CLYGASYSVLISLLATQFFYRYLV-ICKPEHLCK--LNGSK 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,097,728
Number of Sequences: 27780
Number of extensions: 316283
Number of successful extensions: 773
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)