Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2k02
         (809 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       24   1.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   4.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   4.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   4.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   4.4  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 555 LLFMFWKCMFVSIYTLLIILLALR 484
           ++ M+W  + V IYT   ILL +R
Sbjct: 209 MIMMYWFPLVVIIYTYTSILLEIR 232


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -3

Query: 519 IYTLLIIL-LALRFCVIYIFKFSR 451
           IY++L+I+ L    CVI+IF  S+
Sbjct: 63  IYSMLLIMSLVGNCCVIWIFSTSK 86


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 181 YSKVAKIRPEKAI*RPEYLTFAFLAITCAEWISIVARETRDDFY 312
           Y+ V+KI     I  P +    FLAI    W + ++R  R ++Y
Sbjct: 417 YNSVSKIDRASRIVFPLF----FLAINVFYWFAYLSRSERINYY 456


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 540 WKCMFVSIYTLLIILLAL 487
           W   F+ I+T +IIL+ L
Sbjct: 410 WLSFFIVIFTYIIILITL 427


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -3

Query: 519 IYTLLIIL-LALRFCVIYIFKFSR 451
           IY++L+I+ L    CVI+IF  S+
Sbjct: 63  IYSMLLIMSLVGNCCVIWIFSTSK 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,472
Number of Sequences: 438
Number of extensions: 3825
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)