Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2j22
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...   269   2e-73
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    31   0.22 
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    30   0.29 
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    27   3.6  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    27   3.6  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    26   6.3  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   6.3  

>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score =  269 bits (660), Expect = 2e-73
 Identities = 123/201 (61%), Positives = 157/201 (78%), Gaps = 2/201 (0%)
 Frame = +1

Query: 124 PVVDILGDEMTRIIWDLIKEKLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYN 303
           PVV++ GDEMTR+IW +I+EKL+LP++DI+L  YDLG+E RDKT+DQ+T+D A+AI K +
Sbjct: 19  PVVEMDGDEMTRVIWKIIREKLVLPYMDIKLDYYDLGIEARDKTNDQITVDAAKAILKND 78

Query: 304 VGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDKPI 483
           VGIKCATITPDE RV+E+ LKKMWKSPNGTIRNIL GTVFRE I+ KNIP+ + GW  PI
Sbjct: 79  VGIKCATITPDEARVKEYNLKKMWKSPNGTIRNILNGTVFREPILIKNIPKYIPGWTNPI 138

Query: 484 IIGRHAHADQYKATDFVVPGAGTLEIIFKPESGEAIKHV--VHEYKGAGVALAMFNTDAS 657
            IGRHA  DQYK+TD V  G G LE+ F P+   + K    V+E+ G+GVA++M+NTD S
Sbjct: 139 CIGRHAFGDQYKSTDLVASGPGKLELSFTPKGNPSAKETYNVYEFNGSGVAMSMYNTDDS 198

Query: 658 IIDFAHSSFKVXFGQKIPSVL 720
           I  FAHSSF++   +K+P  L
Sbjct: 199 IRGFAHSSFQMALQKKMPLYL 219


>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +1

Query: 136 ILGDEMTRIIWDLIKEKLILPFLDIELHVYDL-GMENRDKTDDQVTIDCAEAIKKYNVGI 312
           I GD + R   + + E      + IE    D+ GME  +K+      +  +++K+  VG+
Sbjct: 26  IPGDGIGRETSNAVTEIFKTANVPIEFEEIDVTGMEKNNKSSGDALHEAIQSLKRNKVGL 85

Query: 313 KCATITPDEK 342
           K    TP EK
Sbjct: 86  KGILFTPFEK 95


>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
 Frame = -3

Query: 618 TLVLMNYMFYCLTRFRFEDYFKSTSTWDNKVSCF--------VLISMSMTSNDDGFVPPC 463
           +L   +Y + C T F    + K  ++ +    CF        + I   +  +D GFV P 
Sbjct: 237 SLFAHHYSYRCNTWFYLSKHMKKVASANMDAQCFYVQNSFYKITILYEIKFDDLGFVQPN 296

Query: 462 YKSRYILANNSLPENSTTKNITDGPIRAFPHFLQFKFF--NSLLI 334
           Y   YIL N +    S T  + +   + F  F+    F   SLL+
Sbjct: 297 YCISYILKNQNEKIVSITSKLLNQLDKRFSEFVSLFGFREGSLLL 341


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = -3

Query: 537 DNKVSCFVLISMSMTSNDDGFVPPCYKSRYILANNSLPENSTTKNITD 394
           D+K +   L+S +++S +   VPP  KSR I+A+ +   +S  K+  D
Sbjct: 536 DSKQTKVSLMSENLSSKEKTAVPPRQKSRDIIASVTDVISSLDKDFQD 583


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -3

Query: 708 YFLSKANFE*RMSKVNNRCISVKHSQ--CYTCTLVLMNYMFYCLTRFRFE 565
           +F  + N +  + + NN   +++ S   C TC  ++ N  F+C   F F+
Sbjct: 34  HFTKENNLKSNIFEHNNNSPTLRSSSVACNTCLKIIRNDSFHCTKCFDFD 83


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 491 PMMMGLSHPVTSLGIFLQIIASLKTVP 411
           P +MG  + VT+   ++ II SLK +P
Sbjct: 253 PALMGYKNKVTAKATYMVIIQSLKHLP 279


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 184 KLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIK 294
           +LI+ F D ELH +     N+   +     D AEA+K
Sbjct: 400 RLIMKFSDSELHTFLFHCVNKIVANTTENSDSAEAVK 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,953,063
Number of Sequences: 5004
Number of extensions: 62598
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)