Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2j21
(790 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 128 1e-30
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 73 6e-14
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 37 0.004
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 31 0.25
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 31 0.25
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 29 0.76
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 29 0.76
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 28 1.3
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 28 1.3
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 28 1.8
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 28 1.8
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 27 2.3
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||... 27 3.1
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 27 4.0
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 27 4.0
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 26 5.4
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 26 7.1
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.4
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.4
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 128 bits (308), Expect = 1e-30
Identities = 73/211 (34%), Positives = 111/211 (52%), Gaps = 8/211 (3%)
Frame = +3
Query: 168 KMTMDIRPNHTIYXXXXXXXXXXXXXXXSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFK 347
K T P+ T+Y L +F +G+++D+ A KTL+MRGQAFV+F
Sbjct: 17 KETDSQTPSETLYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFD 76
Query: 348 EISSATVALRSMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQ-ERPKRXXXXXXXXXXXX 524
+ +A+ AL+ +QG+P Y KPM IQYSK SDII + + + E K+
Sbjct: 77 NLENASRALKDLQGYPLYGKPMMIQYSKSKSDIIVQRESPEEIETRKKDRKNRREMLKRT 136
Query: 525 XXXXXXSRLIGHGIP------GAGILNNVNAE-QPPNQILFLTNLPDETSEMMLSMLFNQ 683
+ H P GA + +N + PPN++L L N+P E + +L+ +F
Sbjct: 137 SALQPAAPKPTHKKPVPKRNVGAERKSTINEDLLPPNKVLLLQNIPQEVNADVLTQIFEA 196
Query: 684 FPGFKEVRLVPNRHDIAFVEFGNEMQSAAAK 776
F GF+EVR+VP R IAFVE+ ++ ++ AK
Sbjct: 197 FSGFQEVRMVPGRRGIAFVEYDSDREATVAK 227
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 72.5 bits (170), Expect = 6e-14
Identities = 32/68 (47%), Positives = 51/68 (75%)
Frame = +3
Query: 252 SLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSK 431
+LY +FS +G ++DIVA+KT KMRGQA V+F + S+A +A+++++ F F+ K M+IQY+
Sbjct: 23 ALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAMKALKNFIFFGKEMKIQYAH 82
Query: 432 IDSDIIAK 455
S II +
Sbjct: 83 SKSKIIER 90
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 36.7 bits (81), Expect = 0.004
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +3
Query: 564 IPGAGILNNVNAEQ-PPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRL-VPNRHDIAF 737
IP + N A+Q PP +++ NLP TSE L +LF+ G+K + + F
Sbjct: 408 IPASTPTNTNPADQNPPCNTIYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCF 467
Query: 738 VEFGNEMQSAAAKKH 782
VEF N + A K+
Sbjct: 468 VEFENIPYAMEALKN 482
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 30.7 bits (66), Expect = 0.25
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSKI 434
LY+IF +G++ + T+ A + F + SAT AL M GF + ++Y +
Sbjct: 179 LYSIFRTYGKLRSV----TINSPTSATLSFSSLRSATSALNCMHGFVYGKTEFHMRYRHM 234
Query: 435 DSDIIAK 455
+ + K
Sbjct: 235 NRFVAFK 241
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 30.7 bits (66), Expect = 0.25
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +3
Query: 306 KTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPK 485
K L M G FV FK+ +SA A+ +M GF + I+ S D A+ + +PK
Sbjct: 661 KYLSM-GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPK 719
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 29.1 bits (62), Expect = 0.76
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +3
Query: 267 FSQFGQILDIVAM---KTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQ 422
F+QFG++LD M T + RG FV + E SA A S + KP+ ++
Sbjct: 267 FNQFGRVLDATLMMDKDTGRPRGFGFVTY-ENESAVEATMSQPYITIHGKPVEVK 320
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +3
Query: 252 SLYAIFSQFGQILDIVAMK---TLKMRGQAFVIFK 347
SL F QFG++LD M+ T + RG F+ FK
Sbjct: 178 SLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFK 212
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 29.1 bits (62), Expect = 0.76
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 600 EQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNR 722
E+ + L +TNL D+T E L LF +F G + V L ++
Sbjct: 197 ERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDK 237
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 594 NAEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLV 713
++++ P+ ILF+ NL ET++ L F Q + VRL+
Sbjct: 221 SSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLM 260
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 621 LFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFGNE--MQSAAAKK 779
+F+ N+P ETS++ L + F K + R A+V+F N +Q A KK
Sbjct: 317 VFVKNIPPETSDVSLKSAMSIFGPVKAIEFA-RRKGTAYVDFVNHECVQLALNKK 370
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +3
Query: 606 PPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFGNEMQSAA 770
PP +LF+ L T + L ++F++F +++ ++ AF+EF N + +
Sbjct: 241 PPENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDN--KESV 298
Query: 771 AKKHYK 788
K ++K
Sbjct: 299 EKAYFK 304
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 618 ILFLTNLPDETSEMMLSMLFNQFPGFKEVRLV 713
++F+ N+P + SE ++ +FNQ K +LV
Sbjct: 8 VVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLV 39
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMKTLKMRGQ---AFVIFKEISSATVALRSMQGFPFYD 404
L +I+S FG + ++V K + + + ++F+ +SSA A+ + + YD
Sbjct: 184 LRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFETLSSAYSAINAEKPSKIYD 236
>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 27.1 bits (57), Expect = 3.1
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +1
Query: 349 KFQVPLLLCGACKD 390
KF +P ++CGACK+
Sbjct: 65 KFHIPCVICGACKN 78
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 330 AFVIFKEISSATVALRSMQGFPFYDKPMRIQYSKI 434
AF+ F+ SA A+ S+ G F ++++Y+ I
Sbjct: 69 AFITFENKCSADNAIASLNGSSFQGNTLKVEYTHI 103
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +3
Query: 333 FVIFKEISSATVALRSMQGFPFYDK---PMRIQYSK 431
FV F+E+ A A+ MQG DK +R+ YSK
Sbjct: 643 FVEFEEVCHAAKAMEKMQGAALDDKIKGGIRLSYSK 678
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 261 AIFSQFGQILDIVAMKTLKMRGQAF--VIFKEISSATVALRSMQGFPFYDKPMRI 419
AIF FG I + + + R + F + ++ SA AL M GF + MR+
Sbjct: 358 AIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRV 412
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 321 RGQAFVIFKEISSATVALRSMQGFPFYDKPMRI 419
RG FV F + + AL MQG D+P+R+
Sbjct: 228 RGYGFVRFTDENDQKSALAEMQGQICGDRPIRV 260
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 560 MPNKSARIFVFLFLPIISTFR*LWTFRSFLKCSFTFC 450
+P+ + VF +P+I+T L F +F F FC
Sbjct: 31 IPSLCCSLAVFPSIPLINTHSNLCLFSNFSHSCFLFC 67
>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 511
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 190 PTIPFISIISMKRLKKKN*RSHFMQYFHNLVKY-WI 294
P+I FI+I S + + KK ++YFH ++ + W+
Sbjct: 183 PSISFINIRSWRTIPKKWCVLQVLRYFHRILGHLWL 218
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,176,255
Number of Sequences: 5004
Number of extensions: 63695
Number of successful extensions: 194
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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