Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2j21
(790 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M15841-1|AAA36796.1| 225|Homo sapiens protein ( Human U2 small ... 226 6e-59
BC036737-1|AAH36737.1| 225|Homo sapiens small nuclear ribonucle... 226 6e-59
BC018022-1|AAH18022.1| 225|Homo sapiens small nuclear ribonucle... 226 6e-59
AL034428-1|CAB38777.2| 225|Homo sapiens small nuclear ribonucle... 226 6e-59
X06347-1|CAA29653.1| 282|Homo sapiens protein ( Human mRNA for ... 148 3e-35
M60784-1|AAA61245.1| 282|Homo sapiens U1 snRNP-specific protein... 148 3e-35
BC008290-1|AAH08290.1| 282|Homo sapiens small nuclear ribonucle... 148 3e-35
BC000405-1|AAH00405.1| 282|Homo sapiens small nuclear ribonucle... 148 3e-35
BC008311-1|AAH08311.1| 109|Homo sapiens Similar to small nuclea... 143 7e-34
D78134-1|BAA11212.1| 172|Homo sapiens CIRP protein. 40 0.008
BT007210-1|AAP35874.1| 172|Homo sapiens cold inducible RNA bind... 40 0.008
BC000901-1|AAH00901.1| 172|Homo sapiens cold inducible RNA bind... 40 0.008
BC000403-1|AAH00403.1| 172|Homo sapiens cold inducible RNA bind... 40 0.008
AF021336-1|AAC51787.1| 172|Homo sapiens DNA damage-inducible RN... 40 0.008
AC004258-1|AAC04895.1| 172|Homo sapiens CIRP protein. 40 0.008
BC024208-1|AAH24208.1| 423|Homo sapiens RNA binding motif prote... 40 0.010
BC002566-1|AAH02566.1| 424|Homo sapiens RNA binding motif prote... 40 0.010
AK001344-1|BAA91638.1| 406|Homo sapiens protein ( Homo sapiens ... 40 0.010
AF275678-1|AAG24388.1| 418|Homo sapiens PP239 protein protein. 40 0.010
BX322653-1|CAH72167.1| 517|Homo sapiens novel protein protein. 39 0.018
BC010697-1|AAH10697.2| 517|Homo sapiens RNA-binding region (RNP... 39 0.018
AY099329-1|AAM45139.1| 517|Homo sapiens RNA recognition protein... 39 0.018
AK057799-1|BAB71580.1| 517|Homo sapiens protein ( Homo sapiens ... 39 0.018
AB058742-1|BAB47468.1| 541|Homo sapiens KIAA1839 protein protein. 39 0.018
AK128423-1|BAC87434.1| 135|Homo sapiens protein ( Homo sapiens ... 38 0.041
CR457257-1|CAG33538.1| 423|Homo sapiens RNPC4 protein. 38 0.055
L10911-1|AAA16347.1| 530|Homo sapiens splicing factor protein. 35 0.29
L10910-1|AAA16346.1| 524|Homo sapiens splicing factor protein. 35 0.29
BX537770-1|CAD97833.1| 373|Homo sapiens hypothetical protein pr... 35 0.29
BC141835-1|AAI41836.1| 530|Homo sapiens RNA binding motif prote... 35 0.29
BC131543-1|AAI31544.1| 508|Homo sapiens RBM39 protein protein. 35 0.29
AL357374-9|CAC11119.1| 524|Homo sapiens RNA binding motif prote... 35 0.29
AL357374-8|CAC11118.1| 530|Homo sapiens RNA binding motif prote... 35 0.29
BC006986-1|AAH06986.1| 413|Homo sapiens RNA binding motif prote... 35 0.38
BC034381-1|AAH34381.1| 266|Homo sapiens RNA binding motif prote... 33 1.2
AK002015-1|BAA92036.1| 267|Homo sapiens protein ( Homo sapiens ... 33 1.2
AF271790-1|AAF76222.1| 569|Homo sapiens APOBEC-1 complementatio... 33 1.2
AF271789-1|AAF76221.1| 586|Homo sapiens APOBEC-1 complementatio... 33 1.2
AF209192-1|AAF34824.1| 586|Homo sapiens Apobec-1 complementatio... 33 1.2
AF156098-1|AAD39257.1| 266|Homo sapiens RNA binding motif prote... 33 1.2
AB209753-1|BAD92990.1| 155|Homo sapiens Hypothetical protein FL... 33 1.2
BC130519-1|AAI30520.1| 594|Homo sapiens apobec-1 complementatio... 33 1.6
BC070262-1|AAH70262.1| 266|Homo sapiens RNA binding motif prote... 33 1.6
AL589794-7|CAI15763.1| 586|Homo sapiens APOBEC1 complementation... 33 1.6
AL589794-6|CAI15764.1| 594|Homo sapiens APOBEC1 complementation... 33 1.6
AL589794-5|CAI15762.1| 594|Homo sapiens APOBEC1 complementation... 33 1.6
AL512366-4|CAI14236.1| 586|Homo sapiens APOBEC1 complementation... 33 1.6
AL512366-3|CAI14235.1| 594|Homo sapiens APOBEC1 complementation... 33 1.6
AL512366-1|CAI14233.1| 594|Homo sapiens APOBEC1 complementation... 33 1.6
AL390039-3|CAI41564.1| 413|Homo sapiens novel protein protein. 33 1.6
AL390039-2|CAC19636.1| 405|Homo sapiens novel protein protein. 33 1.6
AK001878-1|BAA91957.1| 405|Homo sapiens protein ( Homo sapiens ... 33 1.6
AK000324-1|BAA91086.1| 431|Homo sapiens protein ( Homo sapiens ... 33 1.6
AJ272079-1|CAB94755.1| 586|Homo sapiens APOBEC-1 stimulating pr... 33 1.6
AJ272078-1|CAB94754.1| 594|Homo sapiens APOBEC-1 stimulating pr... 33 1.6
X66975-1|CAA47386.1| 557|Homo sapiens nuclear ribonucleoprotein... 32 2.1
X65372-1|CAA46444.1| 557|Homo sapiens polypirimidine tract bin... 32 2.1
X65371-1|CAA46443.1| 550|Homo sapiens polypirimidine tract bin... 32 2.1
X62006-1|CAA43973.1| 531|Homo sapiens polypirimidine tract bin... 32 2.1
X60648-1|CAA43056.1| 531|Homo sapiens polypyrimidine tract-bind... 32 2.1
BT006819-1|AAP35465.1| 557|Homo sapiens polypyrimidine tract bi... 32 2.1
BC013694-1|AAH13694.1| 557|Homo sapiens polypyrimidine tract bi... 32 2.1
BC004383-1|AAH04383.1| 531|Homo sapiens polypyrimidine tract bi... 32 2.1
BC002397-1|AAH02397.1| 557|Homo sapiens polypyrimidine tract bi... 32 2.1
AC006273-1|AAC99798.1| 531|Homo sapiens PTB_HUMAN protein. 32 2.1
AB208910-1|BAD92147.1| 329|Homo sapiens polypyrimidine tract-bi... 32 2.1
BC105582-1|AAI05583.1| 173|Homo sapiens RBMX2 protein protein. 31 4.7
BC033750-1|AAH33750.1| 322|Homo sapiens RNA binding motif prote... 31 4.7
BC003676-1|AAH03676.1| 163|Homo sapiens Unknown (protein for IM... 31 4.7
AL050405-1|CAB43745.1| 322|Homo sapiens hypothetical protein pr... 31 4.7
AL035423-8|CAI42444.1| 322|Homo sapiens RNA binding motif prote... 31 4.7
AF151837-1|AAD34074.1| 351|Homo sapiens CGI-79 protein protein. 31 4.7
U75686-1|AAB97309.1| 644|Homo sapiens polyadenylate binding pro... 31 6.3
U33818-1|AAC50350.1| 644|Homo sapiens inducible poly(A)-binding... 31 6.3
D12799-1|BAA02244.1| 193|Homo sapiens polyadenylate binding pro... 31 6.3
BC094755-1|AAH94755.1| 660|Homo sapiens PABPC4 protein protein. 31 6.3
BC071591-1|AAH71591.1| 660|Homo sapiens PABPC4 protein protein. 31 6.3
BC065540-1|AAH65540.1| 631|Homo sapiens PABPC4 protein protein. 31 6.3
BC044585-1|AAH44585.1| 558|Homo sapiens ROD1 protein protein. 31 6.3
BC041956-1|AAH41956.1| 243|Homo sapiens LOC645974 protein protein. 31 6.3
BC039896-1|AAH39896.1| 618|Homo sapiens Similar to ROD1 regulat... 31 6.3
AL845289-3|CAI12300.1| 644|Homo sapiens poly(A) binding protein... 31 6.3
AL845289-2|CAI12298.1| 660|Homo sapiens poly(A) binding protein... 31 6.3
AL845289-1|CAI12299.1| 615|Homo sapiens poly(A) binding protein... 31 6.3
AL662864-2|CAI40931.1| 200|Homo sapiens novel protein similar t... 31 6.3
AL662864-1|CAI40930.1| 200|Homo sapiens novel protein similar t... 31 6.3
AL365277-4|CAI16414.1| 644|Homo sapiens poly(A) binding protein... 31 6.3
AL365277-3|CAI16412.1| 660|Homo sapiens poly(A) binding protein... 31 6.3
AL365277-2|CAI16413.1| 615|Homo sapiens poly(A) binding protein... 31 6.3
AL359073-2|CAI14113.1| 552|Homo sapiens ROD1 regulator of diffe... 31 6.3
AL158824-9|CAI12354.1| 457|Homo sapiens ROD1 regulator of diffe... 31 6.3
AL158824-8|CAI12353.1| 524|Homo sapiens ROD1 regulator of diffe... 31 6.3
AL158824-5|CAI12350.1| 552|Homo sapiens ROD1 regulator of diffe... 31 6.3
AB208812-1|BAD92049.1| 338|Homo sapiens H2.0-like homeo box 1 v... 31 6.3
AB023967-1|BAA75466.1| 521|Homo sapiens Rod1 protein. 31 6.3
>M15841-1|AAA36796.1| 225|Homo sapiens protein ( Human U2 small
nuclear RNA-associated B'' antigen mRNA, complete cds.
).
Length = 225
Score = 226 bits (553), Expect = 6e-59
Identities = 117/206 (56%), Positives = 139/206 (67%), Gaps = 6/206 (2%)
Frame = +3
Query: 177 MDIRPNHTIYXXXXXXXXXXXXXXXSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEIS 356
MDIRPNHTIY SLYA+FSQFG ++DIVA+KT+KMRGQAFVIFKE+
Sbjct: 1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELG 60
Query: 357 SATVALRSMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKRXXXXXXXXXXXXXXXX 536
S+T ALR +QGFPFY KPMRIQY+K DSDII+K +GTF ++ K+
Sbjct: 61 SSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKK--KEKKKAKTVEQTAT 118
Query: 537 XXSRLIGHGIP------GAGILNNVNAEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFK 698
++ G G P G N + PPN ILFL NLP+ET+EMMLSMLFNQFPGFK
Sbjct: 119 TTNKKPGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 178
Query: 699 EVRLVPNRHDIAFVEFGNEMQSAAAK 776
EVRLVP RHDIAFVEF N+ Q+ AA+
Sbjct: 179 EVRLVPGRHDIAFVEFENDGQAGAAR 204
>BC036737-1|AAH36737.1| 225|Homo sapiens small nuclear
ribonucleoprotein polypeptide B'' protein.
Length = 225
Score = 226 bits (553), Expect = 6e-59
Identities = 117/206 (56%), Positives = 139/206 (67%), Gaps = 6/206 (2%)
Frame = +3
Query: 177 MDIRPNHTIYXXXXXXXXXXXXXXXSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEIS 356
MDIRPNHTIY SLYA+FSQFG ++DIVA+KT+KMRGQAFVIFKE+
Sbjct: 1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELG 60
Query: 357 SATVALRSMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKRXXXXXXXXXXXXXXXX 536
S+T ALR +QGFPFY KPMRIQY+K DSDII+K +GTF ++ K+
Sbjct: 61 SSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKK--KEKKKAKTVEQTAT 118
Query: 537 XXSRLIGHGIP------GAGILNNVNAEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFK 698
++ G G P G N + PPN ILFL NLP+ET+EMMLSMLFNQFPGFK
Sbjct: 119 TTNKKPGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 178
Query: 699 EVRLVPNRHDIAFVEFGNEMQSAAAK 776
EVRLVP RHDIAFVEF N+ Q+ AA+
Sbjct: 179 EVRLVPGRHDIAFVEFENDGQAGAAR 204
>BC018022-1|AAH18022.1| 225|Homo sapiens small nuclear
ribonucleoprotein polypeptide B'' protein.
Length = 225
Score = 226 bits (553), Expect = 6e-59
Identities = 117/206 (56%), Positives = 139/206 (67%), Gaps = 6/206 (2%)
Frame = +3
Query: 177 MDIRPNHTIYXXXXXXXXXXXXXXXSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEIS 356
MDIRPNHTIY SLYA+FSQFG ++DIVA+KT+KMRGQAFVIFKE+
Sbjct: 1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELG 60
Query: 357 SATVALRSMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKRXXXXXXXXXXXXXXXX 536
S+T ALR +QGFPFY KPMRIQY+K DSDII+K +GTF ++ K+
Sbjct: 61 SSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKK--KEKKKAKTVEQTAT 118
Query: 537 XXSRLIGHGIP------GAGILNNVNAEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFK 698
++ G G P G N + PPN ILFL NLP+ET+EMMLSMLFNQFPGFK
Sbjct: 119 TTNKKPGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 178
Query: 699 EVRLVPNRHDIAFVEFGNEMQSAAAK 776
EVRLVP RHDIAFVEF N+ Q+ AA+
Sbjct: 179 EVRLVPGRHDIAFVEFENDGQAGAAR 204
>AL034428-1|CAB38777.2| 225|Homo sapiens small nuclear
ribonucleoprotein polypeptide B'' protein.
Length = 225
Score = 226 bits (553), Expect = 6e-59
Identities = 117/206 (56%), Positives = 139/206 (67%), Gaps = 6/206 (2%)
Frame = +3
Query: 177 MDIRPNHTIYXXXXXXXXXXXXXXXSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEIS 356
MDIRPNHTIY SLYA+FSQFG ++DIVA+KT+KMRGQAFVIFKE+
Sbjct: 1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELG 60
Query: 357 SATVALRSMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKRXXXXXXXXXXXXXXXX 536
S+T ALR +QGFPFY KPMRIQY+K DSDII+K +GTF ++ K+
Sbjct: 61 SSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKK--KEKKKAKTVEQTAT 118
Query: 537 XXSRLIGHGIP------GAGILNNVNAEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFK 698
++ G G P G N + PPN ILFL NLP+ET+EMMLSMLFNQFPGFK
Sbjct: 119 TTNKKPGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 178
Query: 699 EVRLVPNRHDIAFVEFGNEMQSAAAK 776
EVRLVP RHDIAFVEF N+ Q+ AA+
Sbjct: 179 EVRLVPGRHDIAFVEFENDGQAGAAR 204
>X06347-1|CAA29653.1| 282|Homo sapiens protein ( Human mRNA for U1
small nuclear RNP-specific A protein. ).
Length = 282
Score = 148 bits (358), Expect = 3e-35
Identities = 72/103 (69%), Positives = 80/103 (77%)
Frame = +3
Query: 180 DIRPNHTIYXXXXXXXXXXXXXXXSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISS 359
+ RPNHTIY SLYAIFSQFGQILDI+ ++LKMRGQAFVIFKE+SS
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 360 ATVALRSMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKR 488
AT ALRSMQGFPFYDKPMRIQY+K DSDIIAK KGTF ER ++
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRK 107
Score = 108 bits (259), Expect = 3e-23
Identities = 48/60 (80%), Positives = 55/60 (91%)
Frame = +3
Query: 597 AEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFGNEMQSAAAK 776
+E PPN ILFLTNLP+ET+E+MLSMLFNQFPGFKEVRLVP RHDIAFVEF NE+Q+ AA+
Sbjct: 202 SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAR 261
>M60784-1|AAA61245.1| 282|Homo sapiens U1 snRNP-specific protein A
protein.
Length = 282
Score = 148 bits (358), Expect = 3e-35
Identities = 72/103 (69%), Positives = 80/103 (77%)
Frame = +3
Query: 180 DIRPNHTIYXXXXXXXXXXXXXXXSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISS 359
+ RPNHTIY SLYAIFSQFGQILDI+ ++LKMRGQAFVIFKE+SS
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 360 ATVALRSMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKR 488
AT ALRSMQGFPFYDKPMRIQY+K DSDIIAK KGTF ER ++
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRK 107
Score = 108 bits (259), Expect = 3e-23
Identities = 48/60 (80%), Positives = 55/60 (91%)
Frame = +3
Query: 597 AEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFGNEMQSAAAK 776
+E PPN ILFLTNLP+ET+E+MLSMLFNQFPGFKEVRLVP RHDIAFVEF NE+Q+ AA+
Sbjct: 202 SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAR 261
>BC008290-1|AAH08290.1| 282|Homo sapiens small nuclear
ribonucleoprotein polypeptide A protein.
Length = 282
Score = 148 bits (358), Expect = 3e-35
Identities = 72/103 (69%), Positives = 80/103 (77%)
Frame = +3
Query: 180 DIRPNHTIYXXXXXXXXXXXXXXXSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISS 359
+ RPNHTIY SLYAIFSQFGQILDI+ ++LKMRGQAFVIFKE+SS
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 360 ATVALRSMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKR 488
AT ALRSMQGFPFYDKPMRIQY+K DSDIIAK KGTF ER ++
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRK 107
Score = 108 bits (259), Expect = 3e-23
Identities = 48/60 (80%), Positives = 55/60 (91%)
Frame = +3
Query: 597 AEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFGNEMQSAAAK 776
+E PPN ILFLTNLP+ET+E+MLSMLFNQFPGFKEVRLVP RHDIAFVEF NE+Q+ AA+
Sbjct: 202 SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAR 261
>BC000405-1|AAH00405.1| 282|Homo sapiens small nuclear
ribonucleoprotein polypeptide A protein.
Length = 282
Score = 148 bits (358), Expect = 3e-35
Identities = 72/103 (69%), Positives = 80/103 (77%)
Frame = +3
Query: 180 DIRPNHTIYXXXXXXXXXXXXXXXSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISS 359
+ RPNHTIY SLYAIFSQFGQILDI+ ++LKMRGQAFVIFKE+SS
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 360 ATVALRSMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKR 488
AT ALRSMQGFPFYDKPMRIQY+K DSDIIAK KGTF ER ++
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRK 107
Score = 108 bits (259), Expect = 3e-23
Identities = 48/60 (80%), Positives = 55/60 (91%)
Frame = +3
Query: 597 AEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFGNEMQSAAAK 776
+E PPN ILFLTNLP+ET+E+MLSMLFNQFPGFKEVRLVP RHDIAFVEF NE+Q+ AA+
Sbjct: 202 SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAR 261
>BC008311-1|AAH08311.1| 109|Homo sapiens Similar to small nuclear
ribonucleoprotein polypeptide B'' protein.
Length = 109
Score = 143 bits (346), Expect = 7e-34
Identities = 66/104 (63%), Positives = 80/104 (76%)
Frame = +3
Query: 177 MDIRPNHTIYXXXXXXXXXXXXXXXSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEIS 356
MDIRPNHTIY SLYA+FSQFG ++DIVA+KT+KMRGQAFVIFKE+
Sbjct: 1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELG 60
Query: 357 SATVALRSMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKR 488
S+T ALR +QGFPFY KPMRIQY+K DSDII+K +GTF ++ K+
Sbjct: 61 SSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKK 104
>D78134-1|BAA11212.1| 172|Homo sapiens CIRP protein.
Length = 172
Score = 40.3 bits (90), Expect = 0.008
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = +3
Query: 252 SLYAIFSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQ 422
SL +FS++GQI ++V +K T + RG FV F+ I A A+ +M G + +R+
Sbjct: 21 SLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 80
Query: 423 YSKIDSD 443
+ SD
Sbjct: 81 QAGKSSD 87
>BT007210-1|AAP35874.1| 172|Homo sapiens cold inducible RNA binding
protein protein.
Length = 172
Score = 40.3 bits (90), Expect = 0.008
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = +3
Query: 252 SLYAIFSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQ 422
SL +FS++GQI ++V +K T + RG FV F+ I A A+ +M G + +R+
Sbjct: 21 SLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 80
Query: 423 YSKIDSD 443
+ SD
Sbjct: 81 QAGKSSD 87
>BC000901-1|AAH00901.1| 172|Homo sapiens cold inducible RNA binding
protein protein.
Length = 172
Score = 40.3 bits (90), Expect = 0.008
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = +3
Query: 252 SLYAIFSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQ 422
SL +FS++GQI ++V +K T + RG FV F+ I A A+ +M G + +R+
Sbjct: 21 SLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 80
Query: 423 YSKIDSD 443
+ SD
Sbjct: 81 QAGKSSD 87
>BC000403-1|AAH00403.1| 172|Homo sapiens cold inducible RNA binding
protein protein.
Length = 172
Score = 40.3 bits (90), Expect = 0.008
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = +3
Query: 252 SLYAIFSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQ 422
SL +FS++GQI ++V +K T + RG FV F+ I A A+ +M G + +R+
Sbjct: 21 SLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 80
Query: 423 YSKIDSD 443
+ SD
Sbjct: 81 QAGKSSD 87
>AF021336-1|AAC51787.1| 172|Homo sapiens DNA damage-inducible RNA
binding protein protein.
Length = 172
Score = 40.3 bits (90), Expect = 0.008
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = +3
Query: 252 SLYAIFSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQ 422
SL +FS++GQI ++V +K T + RG FV F+ I A A+ +M G + +R+
Sbjct: 21 SLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 80
Query: 423 YSKIDSD 443
+ SD
Sbjct: 81 QAGKSSD 87
>AC004258-1|AAC04895.1| 172|Homo sapiens CIRP protein.
Length = 172
Score = 40.3 bits (90), Expect = 0.008
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = +3
Query: 252 SLYAIFSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQ 422
SL +FS++GQI ++V +K T + RG FV F+ I A A+ +M G + +R+
Sbjct: 21 SLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 80
Query: 423 YSKIDSD 443
+ SD
Sbjct: 81 QAGKSSD 87
>BC024208-1|AAH24208.1| 423|Homo sapiens RNA binding motif protein
23 protein.
Length = 423
Score = 39.9 bits (89), Expect = 0.010
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRI 419
L IF FG+I +IV MK T + +G F+ F + A AL + GF +PMR+
Sbjct: 263 LRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 320
>BC002566-1|AAH02566.1| 424|Homo sapiens RNA binding motif protein
23 protein.
Length = 424
Score = 39.9 bits (89), Expect = 0.010
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRI 419
L IF FG+I +IV MK T + +G F+ F + A AL + GF +PMR+
Sbjct: 263 LRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 320
>AK001344-1|BAA91638.1| 406|Homo sapiens protein ( Homo sapiens
cDNA FLJ10482 fis, clone NT2RP2000153, weakly similar to
GAR2 PROTEIN. ).
Length = 406
Score = 39.9 bits (89), Expect = 0.010
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRI 419
L IF FG+I +IV MK T + +G F+ F + A AL + GF +PMR+
Sbjct: 245 LRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 302
>AF275678-1|AAG24388.1| 418|Homo sapiens PP239 protein protein.
Length = 418
Score = 39.9 bits (89), Expect = 0.010
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRI 419
L IF FG+I +IV MK T + +G F+ F + A AL + GF +PMR+
Sbjct: 257 LRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 314
>BX322653-1|CAH72167.1| 517|Homo sapiens novel protein protein.
Length = 517
Score = 39.1 bits (87), Expect = 0.018
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 258 YAIFSQFGQ--ILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSK 431
Y FS Q + DI MK +M+GQAF+ +A AL+ G+ + KPM +Q+++
Sbjct: 443 YVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFAR 502
>BC010697-1|AAH10697.2| 517|Homo sapiens RNA-binding region (RNP1,
RRM) containing 3 protein.
Length = 517
Score = 39.1 bits (87), Expect = 0.018
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 258 YAIFSQFGQ--ILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSK 431
Y FS Q + DI MK +M+GQAF+ +A AL+ G+ + KPM +Q+++
Sbjct: 443 YVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFAR 502
>AY099329-1|AAM45139.1| 517|Homo sapiens RNA recognition protein
protein.
Length = 517
Score = 39.1 bits (87), Expect = 0.018
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 258 YAIFSQFGQ--ILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSK 431
Y FS Q + DI MK +M+GQAF+ +A AL+ G+ + KPM +Q+++
Sbjct: 443 YVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFAR 502
>AK057799-1|BAB71580.1| 517|Homo sapiens protein ( Homo sapiens
cDNA FLJ25070 fis, clone CBL05164. ).
Length = 517
Score = 39.1 bits (87), Expect = 0.018
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 258 YAIFSQFGQ--ILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSK 431
Y FS Q + DI MK +M+GQAF+ +A AL+ G+ + KPM +Q+++
Sbjct: 443 YVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFAR 502
>AB058742-1|BAB47468.1| 541|Homo sapiens KIAA1839 protein protein.
Length = 541
Score = 39.1 bits (87), Expect = 0.018
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 258 YAIFSQFGQ--ILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSK 431
Y FS Q + DI MK +M+GQAF+ +A AL+ G+ + KPM +Q+++
Sbjct: 467 YVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFAR 526
>AK128423-1|BAC87434.1| 135|Homo sapiens protein ( Homo sapiens
cDNA FLJ46566 fis, clone THYMU3040829, moderately
similar to Cold-inducible RNA-binding protein. ).
Length = 135
Score = 37.9 bits (84), Expect = 0.041
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Frame = +3
Query: 252 SLYAIFSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALRSMQG 389
SL +FS++GQI ++V +K T + RG FV F+ I A A+ +M G
Sbjct: 21 SLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG 69
>CR457257-1|CAG33538.1| 423|Homo sapiens RNPC4 protein.
Length = 423
Score = 37.5 bits (83), Expect = 0.055
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRI 419
L IF FG+I +IV MK T + +G + F + A AL + GF +PMR+
Sbjct: 263 LRGIFEPFGKIDNIVLMKDSDTGRSKGYGLITFSDSECARRALEQLNGFELAGRPMRV 320
>L10911-1|AAA16347.1| 530|Homo sapiens splicing factor protein.
Length = 530
Score = 35.1 bits (77), Expect = 0.29
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAM---KTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRI 419
L IF FG+I I M +T + +G F+ F + A AL + GF +PM++
Sbjct: 266 LRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
>L10910-1|AAA16346.1| 524|Homo sapiens splicing factor protein.
Length = 524
Score = 35.1 bits (77), Expect = 0.29
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAM---KTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRI 419
L IF FG+I I M +T + +G F+ F + A AL + GF +PM++
Sbjct: 266 LRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
>BX537770-1|CAD97833.1| 373|Homo sapiens hypothetical protein
protein.
Length = 373
Score = 35.1 bits (77), Expect = 0.29
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAM---KTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRI 419
L IF FG+I I M +T + +G F+ F + A AL + GF +PM++
Sbjct: 109 LRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 166
>BC141835-1|AAI41836.1| 530|Homo sapiens RNA binding motif protein
39 protein.
Length = 530
Score = 35.1 bits (77), Expect = 0.29
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAM---KTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRI 419
L IF FG+I I M +T + +G F+ F + A AL + GF +PM++
Sbjct: 266 LRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
>BC131543-1|AAI31544.1| 508|Homo sapiens RBM39 protein protein.
Length = 508
Score = 35.1 bits (77), Expect = 0.29
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAM---KTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRI 419
L IF FG+I I M +T + +G F+ F + A AL + GF +PM++
Sbjct: 244 LRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 301
>AL357374-9|CAC11119.1| 524|Homo sapiens RNA binding motif protein
39 protein.
Length = 524
Score = 35.1 bits (77), Expect = 0.29
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAM---KTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRI 419
L IF FG+I I M +T + +G F+ F + A AL + GF +PM++
Sbjct: 266 LRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
>AL357374-8|CAC11118.1| 530|Homo sapiens RNA binding motif protein
39 protein.
Length = 530
Score = 35.1 bits (77), Expect = 0.29
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAM---KTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRI 419
L IF FG+I I M +T + +G F+ F + A AL + GF +PM++
Sbjct: 266 LRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
>BC006986-1|AAH06986.1| 413|Homo sapiens RNA binding motif protein
41 protein.
Length = 413
Score = 34.7 bits (76), Expect = 0.38
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +3
Query: 303 MKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSK 431
M T +MRGQAF+ F A AL + G+ Y K + I++ K
Sbjct: 344 MMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 386
>BC034381-1|AAH34381.1| 266|Homo sapiens RNA binding motif protein
7 protein.
Length = 266
Score = 33.1 bits (72), Expect = 1.2
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMKTL--KMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQY 425
L+ +F Q G ++ + K K + AFV FK S A+ + G Y +P++IQ+
Sbjct: 26 LFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLNGIKLYGRPIKIQF 84
>AK002015-1|BAA92036.1| 267|Homo sapiens protein ( Homo sapiens
cDNA FLJ11153 fis, clone PLACE1006917, weakly similar to
HSH49 PROTEIN. ).
Length = 267
Score = 33.1 bits (72), Expect = 1.2
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMKTL--KMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQY 425
L+ +F Q G ++ + K K + AFV FK S A+ + G Y +P++IQ+
Sbjct: 26 LFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLNGIKLYGRPIKIQF 84
>AF271790-1|AAF76222.1| 569|Homo sapiens APOBEC-1 complementation
factor related protein protein.
Length = 569
Score = 33.1 bits (72), Expect = 1.2
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = +3
Query: 546 RLIGHGIPGAGILNNVNAEQPPN---QILFLTNLPDETSEMMLSMLFNQF-PGFKEVRLV 713
+L GHGI V ++ +IL++ NL TSE M+ FN PG V V
Sbjct: 188 QLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPG--AVERV 245
Query: 714 PNRHDIAFVEFGNEMQSAAAKK 779
D AFV F N + A K
Sbjct: 246 KKIRDYAFVHFSNRKDAVEAMK 267
>AF271789-1|AAF76221.1| 586|Homo sapiens APOBEC-1 complementation
factor protein.
Length = 586
Score = 33.1 bits (72), Expect = 1.2
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = +3
Query: 546 RLIGHGIPGAGILNNVNAEQPPN---QILFLTNLPDETSEMMLSMLFNQF-PGFKEVRLV 713
+L GHGI V ++ +IL++ NL TSE M+ FN PG V V
Sbjct: 205 QLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPG--AVERV 262
Query: 714 PNRHDIAFVEFGNEMQSAAAKK 779
D AFV F N + A K
Sbjct: 263 KKIRDYAFVHFSNRKDAVEAMK 284
>AF209192-1|AAF34824.1| 586|Homo sapiens Apobec-1 complementation
factor protein.
Length = 586
Score = 33.1 bits (72), Expect = 1.2
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = +3
Query: 546 RLIGHGIPGAGILNNVNAEQPPN---QILFLTNLPDETSEMMLSMLFNQF-PGFKEVRLV 713
+L GHGI V ++ +IL++ NL TSE M+ FN PG V V
Sbjct: 205 QLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPG--AVERV 262
Query: 714 PNRHDIAFVEFGNEMQSAAAKK 779
D AFV F N + A K
Sbjct: 263 KKIRDYAFVHFSNRKDAVEAMK 284
>AF156098-1|AAD39257.1| 266|Homo sapiens RNA binding motif protein
7 protein.
Length = 266
Score = 33.1 bits (72), Expect = 1.2
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMKTL--KMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQY 425
L+ +F Q G ++ + K K + AFV FK S A+ + G Y +P++IQ+
Sbjct: 26 LFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLNGIKLYGRPIKIQF 84
>AB209753-1|BAD92990.1| 155|Homo sapiens Hypothetical protein
FLJ11153 variant protein.
Length = 155
Score = 33.1 bits (72), Expect = 1.2
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMKTL--KMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQY 425
L+ +F Q G ++ + K K + AFV FK S A+ + G Y +P++IQ+
Sbjct: 32 LFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLNGIKLYGRPIKIQF 90
>BC130519-1|AAI30520.1| 594|Homo sapiens apobec-1 complementation
factor protein.
Length = 594
Score = 32.7 bits (71), Expect = 1.6
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = +3
Query: 546 RLIGHGIPGAGILNNVNAEQPPN---QILFLTNLPDETSEMMLSMLFNQF-PGFKEVRLV 713
+L GHGI V ++ +IL++ NL TSE M+ FN PG V V
Sbjct: 205 QLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPG--AVERV 262
Query: 714 PNRHDIAFVEFGNEMQSAAAKK 779
D AFV F N + A K
Sbjct: 263 KKIRDYAFVHFSNREDAVEAMK 284
>BC070262-1|AAH70262.1| 266|Homo sapiens RNA binding motif protein
7 protein.
Length = 266
Score = 32.7 bits (71), Expect = 1.6
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMKTL--KMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQY 425
L+ +F Q G ++ + K K + AFV FK S A+ + G Y +P++IQ+
Sbjct: 26 LFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLNGIRLYGRPIKIQF 84
>AL589794-7|CAI15763.1| 586|Homo sapiens APOBEC1 complementation
factor protein.
Length = 586
Score = 32.7 bits (71), Expect = 1.6
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = +3
Query: 546 RLIGHGIPGAGILNNVNAEQPPN---QILFLTNLPDETSEMMLSMLFNQF-PGFKEVRLV 713
+L GHGI V ++ +IL++ NL TSE M+ FN PG V V
Sbjct: 205 QLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPG--AVERV 262
Query: 714 PNRHDIAFVEFGNEMQSAAAKK 779
D AFV F N + A K
Sbjct: 263 KKIRDYAFVHFSNREDAVEAMK 284
>AL589794-6|CAI15764.1| 594|Homo sapiens APOBEC1 complementation
factor protein.
Length = 594
Score = 32.7 bits (71), Expect = 1.6
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = +3
Query: 546 RLIGHGIPGAGILNNVNAEQPPN---QILFLTNLPDETSEMMLSMLFNQF-PGFKEVRLV 713
+L GHGI V ++ +IL++ NL TSE M+ FN PG V V
Sbjct: 205 QLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPG--AVERV 262
Query: 714 PNRHDIAFVEFGNEMQSAAAKK 779
D AFV F N + A K
Sbjct: 263 KKIRDYAFVHFSNREDAVEAMK 284
>AL589794-5|CAI15762.1| 594|Homo sapiens APOBEC1 complementation
factor protein.
Length = 594
Score = 32.7 bits (71), Expect = 1.6
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = +3
Query: 546 RLIGHGIPGAGILNNVNAEQPPN---QILFLTNLPDETSEMMLSMLFNQF-PGFKEVRLV 713
+L GHGI V ++ +IL++ NL TSE M+ FN PG V V
Sbjct: 213 QLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPG--AVERV 270
Query: 714 PNRHDIAFVEFGNEMQSAAAKK 779
D AFV F N + A K
Sbjct: 271 KKIRDYAFVHFSNREDAVEAMK 292
>AL512366-4|CAI14236.1| 586|Homo sapiens APOBEC1 complementation
factor protein.
Length = 586
Score = 32.7 bits (71), Expect = 1.6
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = +3
Query: 546 RLIGHGIPGAGILNNVNAEQPPN---QILFLTNLPDETSEMMLSMLFNQF-PGFKEVRLV 713
+L GHGI V ++ +IL++ NL TSE M+ FN PG V V
Sbjct: 205 QLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPG--AVERV 262
Query: 714 PNRHDIAFVEFGNEMQSAAAKK 779
D AFV F N + A K
Sbjct: 263 KKIRDYAFVHFSNREDAVEAMK 284
>AL512366-3|CAI14235.1| 594|Homo sapiens APOBEC1 complementation
factor protein.
Length = 594
Score = 32.7 bits (71), Expect = 1.6
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = +3
Query: 546 RLIGHGIPGAGILNNVNAEQPPN---QILFLTNLPDETSEMMLSMLFNQF-PGFKEVRLV 713
+L GHGI V ++ +IL++ NL TSE M+ FN PG V V
Sbjct: 205 QLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPG--AVERV 262
Query: 714 PNRHDIAFVEFGNEMQSAAAKK 779
D AFV F N + A K
Sbjct: 263 KKIRDYAFVHFSNREDAVEAMK 284
>AL512366-1|CAI14233.1| 594|Homo sapiens APOBEC1 complementation
factor protein.
Length = 594
Score = 32.7 bits (71), Expect = 1.6
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = +3
Query: 546 RLIGHGIPGAGILNNVNAEQPPN---QILFLTNLPDETSEMMLSMLFNQF-PGFKEVRLV 713
+L GHGI V ++ +IL++ NL TSE M+ FN PG V V
Sbjct: 213 QLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPG--AVERV 270
Query: 714 PNRHDIAFVEFGNEMQSAAAKK 779
D AFV F N + A K
Sbjct: 271 KKIRDYAFVHFSNREDAVEAMK 292
>AL390039-3|CAI41564.1| 413|Homo sapiens novel protein protein.
Length = 413
Score = 32.7 bits (71), Expect = 1.6
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 303 MKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSK 431
M T +MRGQAF+ F A AL + G+ + K + I++ K
Sbjct: 344 MMTGRMRGQAFITFPNKEIAWQALHLVNGYKLHGKILVIEFGK 386
>AL390039-2|CAC19636.1| 405|Homo sapiens novel protein protein.
Length = 405
Score = 32.7 bits (71), Expect = 1.6
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 303 MKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSK 431
M T +MRGQAF+ F A AL + G+ + K + I++ K
Sbjct: 344 MMTGRMRGQAFITFPNKEIAWQALHLVNGYKLHGKILVIEFGK 386
>AK001878-1|BAA91957.1| 405|Homo sapiens protein ( Homo sapiens
cDNA FLJ11016 fis, clone PLACE1003334. ).
Length = 405
Score = 32.7 bits (71), Expect = 1.6
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 303 MKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSK 431
M T +MRGQAF+ F A AL + G+ + K + I++ K
Sbjct: 344 MMTGRMRGQAFITFPNKEIAWQALHLVNGYKLHGKILVIEFGK 386
>AK000324-1|BAA91086.1| 431|Homo sapiens protein ( Homo sapiens
cDNA FLJ20317 fis, clone HEP08678. ).
Length = 431
Score = 32.7 bits (71), Expect = 1.6
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = +3
Query: 546 RLIGHGIPGAGILNNVNAEQPPN---QILFLTNLPDETSEMMLSMLFNQF-PGFKEVRLV 713
+L GHGI V ++ +IL++ NL TSE M+ FN PG V V
Sbjct: 50 QLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPG--AVERV 107
Query: 714 PNRHDIAFVEFGNEMQSAAAKK 779
D AFV F N + A K
Sbjct: 108 KKIRDYAFVHFSNREDAVEAMK 129
>AJ272079-1|CAB94755.1| 586|Homo sapiens APOBEC-1 stimulating
protein protein.
Length = 586
Score = 32.7 bits (71), Expect = 1.6
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = +3
Query: 546 RLIGHGIPGAGILNNVNAEQPPN---QILFLTNLPDETSEMMLSMLFNQF-PGFKEVRLV 713
+L GHGI V ++ +IL++ NL TSE M+ FN PG V V
Sbjct: 205 QLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPG--AVERV 262
Query: 714 PNRHDIAFVEFGNEMQSAAAKK 779
D AFV F N + A K
Sbjct: 263 KKIRDYAFVHFSNREDAVEAMK 284
>AJ272078-1|CAB94754.1| 594|Homo sapiens APOBEC-1 stimulating
protein protein.
Length = 594
Score = 32.7 bits (71), Expect = 1.6
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = +3
Query: 546 RLIGHGIPGAGILNNVNAEQPPN---QILFLTNLPDETSEMMLSMLFNQF-PGFKEVRLV 713
+L GHGI V ++ +IL++ NL TSE M+ FN PG V V
Sbjct: 205 QLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPG--AVERV 262
Query: 714 PNRHDIAFVEFGNEMQSAAAKK 779
D AFV F N + A K
Sbjct: 263 KKIRDYAFVHFSNREDAVEAMK 284
>X66975-1|CAA47386.1| 557|Homo sapiens nuclear ribonucleoprotein
protein.
Length = 557
Score = 32.3 bits (70), Expect = 2.1
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDK--PMRIQYS 428
L+ IFS+FG +L I+ T + QA + + + SA A S+ G Y+ +RI +S
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 429 KIDS 440
K+ S
Sbjct: 259 KLTS 262
>X65372-1|CAA46444.1| 557|Homo sapiens polypirimidine tract
binding protein protein.
Length = 557
Score = 32.3 bits (70), Expect = 2.1
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDK--PMRIQYS 428
L+ IFS+FG +L I+ T + QA + + + SA A S+ G Y+ +RI +S
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 429 KIDS 440
K+ S
Sbjct: 259 KLTS 262
>X65371-1|CAA46443.1| 550|Homo sapiens polypirimidine tract
binding protein protein.
Length = 550
Score = 32.3 bits (70), Expect = 2.1
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDK--PMRIQYS 428
L+ IFS+FG +L I+ T + QA + + + SA A S+ G Y+ +RI +S
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 429 KIDS 440
K+ S
Sbjct: 259 KLTS 262
>X62006-1|CAA43973.1| 531|Homo sapiens polypirimidine tract
binding protein protein.
Length = 531
Score = 32.3 bits (70), Expect = 2.1
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDK--PMRIQYS 428
L+ IFS+FG +L I+ T + QA + + + SA A S+ G Y+ +RI +S
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 429 KIDS 440
K+ S
Sbjct: 259 KLTS 262
>X60648-1|CAA43056.1| 531|Homo sapiens polypyrimidine tract-binding
protein (pPTB) protein.
Length = 531
Score = 32.3 bits (70), Expect = 2.1
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDK--PMRIQYS 428
L+ IFS+FG +L I+ T + QA + + + SA A S+ G Y+ +RI +S
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 429 KIDS 440
K+ S
Sbjct: 259 KLTS 262
>BT006819-1|AAP35465.1| 557|Homo sapiens polypyrimidine tract
binding protein 1 protein.
Length = 557
Score = 32.3 bits (70), Expect = 2.1
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDK--PMRIQYS 428
L+ IFS+FG +L I+ T + QA + + + SA A S+ G Y+ +RI +S
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 429 KIDS 440
K+ S
Sbjct: 259 KLTS 262
>BC013694-1|AAH13694.1| 557|Homo sapiens polypyrimidine tract
binding protein 1 protein.
Length = 557
Score = 32.3 bits (70), Expect = 2.1
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDK--PMRIQYS 428
L+ IFS+FG +L I+ T + QA + + + SA A S+ G Y+ +RI +S
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 429 KIDS 440
K+ S
Sbjct: 259 KLTS 262
>BC004383-1|AAH04383.1| 531|Homo sapiens polypyrimidine tract
binding protein 1 protein.
Length = 531
Score = 32.3 bits (70), Expect = 2.1
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDK--PMRIQYS 428
L+ IFS+FG +L I+ T + QA + + + SA A S+ G Y+ +RI +S
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 429 KIDS 440
K+ S
Sbjct: 259 KLTS 262
>BC002397-1|AAH02397.1| 557|Homo sapiens polypyrimidine tract
binding protein 1 protein.
Length = 557
Score = 32.3 bits (70), Expect = 2.1
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDK--PMRIQYS 428
L+ IFS+FG +L I+ T + QA + + + SA A S+ G Y+ +RI +S
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 429 KIDS 440
K+ S
Sbjct: 259 KLTS 262
>AC006273-1|AAC99798.1| 531|Homo sapiens PTB_HUMAN protein.
Length = 531
Score = 32.3 bits (70), Expect = 2.1
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDK--PMRIQYS 428
L+ IFS+FG +L I+ T + QA + + + SA A S+ G Y+ +RI +S
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 429 KIDS 440
K+ S
Sbjct: 259 KLTS 262
>AB208910-1|BAD92147.1| 329|Homo sapiens polypyrimidine
tract-binding protein 1 isoform c variant protein.
Length = 329
Score = 32.3 bits (70), Expect = 2.1
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDK--PMRIQYS 428
L+ IFS+FG +L I+ T + QA + + + SA A S+ G Y+ +RI +S
Sbjct: 217 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 275
Query: 429 KIDS 440
K+ S
Sbjct: 276 KLTS 279
>BC105582-1|AAI05583.1| 173|Homo sapiens RBMX2 protein protein.
Length = 173
Score = 31.1 bits (67), Expect = 4.7
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAM---KTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQY 425
+ +FSQ+G+I++I + KT K +G F+ +++ S +A+ + G + +R+ +
Sbjct: 52 IICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDH 111
>BC033750-1|AAH33750.1| 322|Homo sapiens RNA binding motif protein,
X-linked 2 protein.
Length = 322
Score = 31.1 bits (67), Expect = 4.7
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAM---KTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQY 425
+ +FSQ+G+I++I + KT K +G F+ +++ S +A+ + G + +R+ +
Sbjct: 52 IICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDH 111
>BC003676-1|AAH03676.1| 163|Homo sapiens Unknown (protein for
IMAGE:3686686) protein.
Length = 163
Score = 31.1 bits (67), Expect = 4.7
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAM---KTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQY 425
+ +FSQ+G+I++I + KT K +G F+ +++ S +A+ + G + +R+ +
Sbjct: 52 IICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDH 111
>AL050405-1|CAB43745.1| 322|Homo sapiens hypothetical protein
protein.
Length = 322
Score = 31.1 bits (67), Expect = 4.7
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAM---KTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQY 425
+ +FSQ+G+I++I + KT K +G F+ +++ S +A+ + G + +R+ +
Sbjct: 52 IICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDH 111
>AL035423-8|CAI42444.1| 322|Homo sapiens RNA binding motif protein,
X-linked 2 protein.
Length = 322
Score = 31.1 bits (67), Expect = 4.7
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAM---KTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQY 425
+ +FSQ+G+I++I + KT K +G F+ +++ S +A+ + G + +R+ +
Sbjct: 52 IICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDH 111
>AF151837-1|AAD34074.1| 351|Homo sapiens CGI-79 protein protein.
Length = 351
Score = 31.1 bits (67), Expect = 4.7
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAM---KTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQY 425
+ +FSQ+G+I++I + KT K +G F+ +++ S +A+ + G + +R+ +
Sbjct: 52 IICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDH 111
>U75686-1|AAB97309.1| 644|Homo sapiens polyadenylate binding
protein protein.
Length = 644
Score = 30.7 bits (66), Expect = 6.3
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 252 SLYAIFSQFGQILDIVAMK--TLKMRGQAFVIFKEISSATVALRSMQG 389
SL +FSQFG+ L + M+ K +G FV +++ A A+ M G
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
>U33818-1|AAC50350.1| 644|Homo sapiens inducible poly(A)-binding
protein protein.
Length = 644
Score = 30.7 bits (66), Expect = 6.3
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 252 SLYAIFSQFGQILDIVAMK--TLKMRGQAFVIFKEISSATVALRSMQG 389
SL +FSQFG+ L + M+ K +G FV +++ A A+ M G
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
>D12799-1|BAA02244.1| 193|Homo sapiens polyadenylate binding
protein II protein.
Length = 193
Score = 30.7 bits (66), Expect = 6.3
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 252 SLYAIFSQFGQILDIVAMK--TLKMRGQAFVIFKEISSATVALRSMQG 389
SL +FSQFG+ L + M+ K +G FV +++ A A+ M G
Sbjct: 17 SLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 64
>BC094755-1|AAH94755.1| 660|Homo sapiens PABPC4 protein protein.
Length = 660
Score = 30.7 bits (66), Expect = 6.3
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 252 SLYAIFSQFGQILDIVAMK--TLKMRGQAFVIFKEISSATVALRSMQG 389
SL +FSQFG+ L + M+ K +G FV +++ A A+ M G
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
>BC071591-1|AAH71591.1| 660|Homo sapiens PABPC4 protein protein.
Length = 660
Score = 30.7 bits (66), Expect = 6.3
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 252 SLYAIFSQFGQILDIVAMK--TLKMRGQAFVIFKEISSATVALRSMQG 389
SL +FSQFG+ L + M+ K +G FV +++ A A+ M G
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
>BC065540-1|AAH65540.1| 631|Homo sapiens PABPC4 protein protein.
Length = 631
Score = 30.7 bits (66), Expect = 6.3
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 252 SLYAIFSQFGQILDIVAMK--TLKMRGQAFVIFKEISSATVALRSMQG 389
SL +FSQFG+ L + M+ K +G FV +++ A A+ M G
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
>BC044585-1|AAH44585.1| 558|Homo sapiens ROD1 protein protein.
Length = 558
Score = 30.7 bits (66), Expect = 6.3
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDK--PMRIQYS 428
L+ IFS+FG +L I+ T + QA + + + +A A ++ G Y+ +RI +S
Sbjct: 204 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFS 262
Query: 429 KIDS 440
K+ S
Sbjct: 263 KLTS 266
>BC041956-1|AAH41956.1| 243|Homo sapiens LOC645974 protein protein.
Length = 243
Score = 30.7 bits (66), Expect = 6.3
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 252 SLYAIFSQFGQILDI-VAMKTLKMRGQAFVIFKEISSATVALRSMQG 389
+LY IFS FG IL VA +G FV F++ SA A+ M G
Sbjct: 148 ALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNG 194
>BC039896-1|AAH39896.1| 618|Homo sapiens Similar to ROD1 regulator
of differentiation 1 (S. pombe) protein.
Length = 618
Score = 30.7 bits (66), Expect = 6.3
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDK--PMRIQYS 428
L+ IFS+FG +L I+ T + QA + + + +A A ++ G Y+ +RI +S
Sbjct: 241 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFS 299
Query: 429 KIDS 440
K+ S
Sbjct: 300 KLTS 303
>AL845289-3|CAI12300.1| 644|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibletaining 6 protein.
Length = 644
Score = 30.7 bits (66), Expect = 6.3
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 252 SLYAIFSQFGQILDIVAMK--TLKMRGQAFVIFKEISSATVALRSMQG 389
SL +FSQFG+ L + M+ K +G FV +++ A A+ M G
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
>AL845289-2|CAI12298.1| 660|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibleseudogene protein.
Length = 660
Score = 30.7 bits (66), Expect = 6.3
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 252 SLYAIFSQFGQILDIVAMK--TLKMRGQAFVIFKEISSATVALRSMQG 389
SL +FSQFG+ L + M+ K +G FV +++ A A+ M G
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
>AL845289-1|CAI12299.1| 615|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibleeudogene protein.
Length = 615
Score = 30.7 bits (66), Expect = 6.3
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 252 SLYAIFSQFGQILDIVAMK--TLKMRGQAFVIFKEISSATVALRSMQG 389
SL +FSQFG+ L + M+ K +G FV +++ A A+ M G
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
>AL662864-2|CAI40931.1| 200|Homo sapiens novel protein similar to
poly(A)binding protein, cytoplasmic 1 (LOC340530)
protein.
Length = 200
Score = 30.7 bits (66), Expect = 6.3
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 252 SLYAIFSQFGQILDI-VAMKTLKMRGQAFVIFKEISSATVALRSMQG 389
+LY IFS FG IL VA +G FV F++ SA A+ M G
Sbjct: 105 ALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNG 151
>AL662864-1|CAI40930.1| 200|Homo sapiens novel protein similar to
poly(A)binding protein, cytoplasmic 1 (LOC340529)
protein.
Length = 200
Score = 30.7 bits (66), Expect = 6.3
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 252 SLYAIFSQFGQILDI-VAMKTLKMRGQAFVIFKEISSATVALRSMQG 389
+LY IFS FG IL VA +G FV F++ SA A+ M G
Sbjct: 105 ALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNG 151
>AL365277-4|CAI16414.1| 644|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblepeptide, antigen CD29 includes
protein.
Length = 644
Score = 30.7 bits (66), Expect = 6.3
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 252 SLYAIFSQFGQILDIVAMK--TLKMRGQAFVIFKEISSATVALRSMQG 389
SL +FSQFG+ L + M+ K +G FV +++ A A+ M G
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
>AL365277-3|CAI16412.1| 660|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducible) pseudogene protein.
Length = 660
Score = 30.7 bits (66), Expect = 6.3
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 252 SLYAIFSQFGQILDIVAMK--TLKMRGQAFVIFKEISSATVALRSMQG 389
SL +FSQFG+ L + M+ K +G FV +++ A A+ M G
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
>AL365277-2|CAI16413.1| 615|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblely, member 5 protein.
Length = 615
Score = 30.7 bits (66), Expect = 6.3
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 252 SLYAIFSQFGQILDIVAMK--TLKMRGQAFVIFKEISSATVALRSMQG 389
SL +FSQFG+ L + M+ K +G FV +++ A A+ M G
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
>AL359073-2|CAI14113.1| 552|Homo sapiens ROD1 regulator of
differentiation 1 (S. pombe) protein.
Length = 552
Score = 30.7 bits (66), Expect = 6.3
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDK--PMRIQYS 428
L+ IFS+FG +L I+ T + QA + + + +A A ++ G Y+ +RI +S
Sbjct: 198 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFS 256
Query: 429 KIDS 440
K+ S
Sbjct: 257 KLTS 260
>AL158824-9|CAI12354.1| 457|Homo sapiens ROD1 regulator of
differentiation 1 (S. pombe) protein.
Length = 457
Score = 30.7 bits (66), Expect = 6.3
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDK--PMRIQYS 428
L+ IFS+FG +L I+ T + QA + + + +A A ++ G Y+ +RI +S
Sbjct: 103 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFS 161
Query: 429 KIDS 440
K+ S
Sbjct: 162 KLTS 165
>AL158824-8|CAI12353.1| 524|Homo sapiens ROD1 regulator of
differentiation 1 (S. pombe) protein.
Length = 524
Score = 30.7 bits (66), Expect = 6.3
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDK--PMRIQYS 428
L+ IFS+FG +L I+ T + QA + + + +A A ++ G Y+ +RI +S
Sbjct: 170 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFS 228
Query: 429 KIDS 440
K+ S
Sbjct: 229 KLTS 232
>AL158824-5|CAI12350.1| 552|Homo sapiens ROD1 regulator of
differentiation 1 (S. pombe) protein.
Length = 552
Score = 30.7 bits (66), Expect = 6.3
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDK--PMRIQYS 428
L+ IFS+FG +L I+ T + QA + + + +A A ++ G Y+ +RI +S
Sbjct: 198 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFS 256
Query: 429 KIDS 440
K+ S
Sbjct: 257 KLTS 260
>AB208812-1|BAD92049.1| 338|Homo sapiens H2.0-like homeo box 1
variant protein.
Length = 338
Score = 30.7 bits (66), Expect = 6.3
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Frame = -1
Query: 670 IDNIIS-----EVSSGRFVKNRIWLGGCSALTLFRIPAP--GIPC 557
ID I+S +V G ++ R W GGC LT +P P G+ C
Sbjct: 293 IDRILSAEFDPKVKEGNTLRGRSWAGGCRPLTTDPLPGPRAGLGC 337
>AB023967-1|BAA75466.1| 521|Homo sapiens Rod1 protein.
Length = 521
Score = 30.7 bits (66), Expect = 6.3
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDK--PMRIQYS 428
L+ IFS+FG +L I+ T + QA + + + +A A ++ G Y+ +RI +S
Sbjct: 167 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFS 225
Query: 429 KIDS 440
K+ S
Sbjct: 226 KLTS 229
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,237,005
Number of Sequences: 237096
Number of extensions: 2134675
Number of successful extensions: 3474
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 3350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3470
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9646050614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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