Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2j21
(790 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 156 2e-38
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 153 1e-37
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 39 0.005
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 36 0.025
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 34 0.13
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 33 0.31
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 31 0.94
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 31 0.94
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 31 0.94
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 30 2.2
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 30 2.2
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 30 2.2
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 30 2.2
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 30 2.2
Z69904-3|CAA93780.1| 372|Caenorhabditis elegans Hypothetical pr... 29 3.8
AF022985-6|AAB69963.1| 457|Caenorhabditis elegans Hypothetical ... 29 3.8
U80025-2|AAD32270.3| 806|Caenorhabditis elegans Hypothetical pr... 29 5.0
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 28 8.8
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 28 8.8
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 28 8.8
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 28 8.8
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 28 8.8
>U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 3 protein.
Length = 217
Score = 156 bits (378), Expect = 2e-38
Identities = 78/200 (39%), Positives = 117/200 (58%)
Frame = +3
Query: 180 DIRPNHTIYXXXXXXXXXXXXXXXSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISS 359
DI PNHTIY SL+ +F+QFG+I+ +++ + KMRGQA ++FKE+SS
Sbjct: 3 DINPNHTIYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSS 62
Query: 360 ATVALRSMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKRXXXXXXXXXXXXXXXXX 539
A+ ALR++QGFPFY KPMRIQY++ DSD+I+++KGTF E+ ++
Sbjct: 63 ASNALRALQGFPFYGKPMRIQYAREDSDVISRAKGTFVEKRQKSTKIAKKPYEKPAKNGK 122
Query: 540 XSRLIGHGIPGAGILNNVNAEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPN 719
+ P + PN ILF +N+P+ T + +F+QFPG +EVR +PN
Sbjct: 123 SA-----AEPTQKEPQETDGPGLPNNILFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPN 177
Query: 720 RHDIAFVEFGNEMQSAAAKK 779
D AF+E+ +E S A++
Sbjct: 178 TKDFAFIEYESEDLSEPARQ 197
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 153 bits (372), Expect = 1e-37
Identities = 81/199 (40%), Positives = 116/199 (58%)
Frame = +3
Query: 180 DIRPNHTIYXXXXXXXXXXXXXXXSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISS 359
++ PN T+Y SL A+F QFG+I+ ++ +TLKMRGQA VIFKE+ +
Sbjct: 3 EVAPNSTLYINNLNEKIKIDELRKSLVAVFKQFGEIVSVMCFRTLKMRGQAHVIFKELPA 62
Query: 360 ATVALRSMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKRXXXXXXXXXXXXXXXXX 539
A+ A ++ GFPFY+KPMRIQ+++ DSD++A+ KGT+ +R +
Sbjct: 63 ASAAREALNGFPFYEKPMRIQFAREDSDVVAQEKGTYIKREPK-------YLSEKILKKP 115
Query: 540 XSRLIGHGIPGAGILNNVNAEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPN 719
SR +G G PPN+ILF TNLPD + ML ++FNQF G K++R+VPN
Sbjct: 116 KSRKKENGGDGPA---------PPNKILFCTNLPDSATAEMLEIMFNQFAGLKDIRMVPN 166
Query: 720 RHDIAFVEFGNEMQSAAAK 776
R IAFVEF + + A+
Sbjct: 167 RPGIAFVEFDTDSLAIPAR 185
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQY 425
+Y IF +FG + I T + RG AFV++++I A A + G+ ++ + + Y
Sbjct: 35 MYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAKTACEHLSGYNVSNRYLVVLY 91
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 36.3 bits (80), Expect = 0.025
Identities = 20/79 (25%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Frame = +3
Query: 261 AIFSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSK 431
A+FSQ+G++++I ++ T K +G AF+ +K+ S +A+ + G + + +R+ +
Sbjct: 56 AVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNFNGISLHKRMIRVDH-- 113
Query: 432 IDSDIIAKSKGTFQERPKR 488
++ + K K + KR
Sbjct: 114 VEEYKVPKYKEDADDETKR 132
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 33.9 bits (74), Expect = 0.13
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +3
Query: 267 FSQFGQILDIVAM---KTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRI 419
FS GQI ++ + +T + RG AF+ F E SA A+ M G F +P+R+
Sbjct: 25 FSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRV 78
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 32.7 bits (71), Expect = 0.31
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +3
Query: 255 LYAIFSQFGQILDIVAMK--TLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQY 425
L+ +FSQFG I+++ ++ T + +G AFV + A A+ S+ G K +++ +
Sbjct: 390 LWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAMLSLNGTNLAGKTLQVVF 448
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 31.1 bits (67), Expect = 0.94
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 600 EQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFGN 752
E PP +LF+ L T++ L ++F++F +V +R AF+EF N
Sbjct: 236 EVPPENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDN 291
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 31.1 bits (67), Expect = 0.94
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 600 EQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFGN 752
E PP +LF+ L T++ L ++F++F +V +R AF+EF N
Sbjct: 236 EVPPENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDN 291
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 31.1 bits (67), Expect = 0.94
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 600 EQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFGN 752
E PP +LF+ L T++ L ++F++F +V +R AF+EF N
Sbjct: 167 EVPPENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDN 222
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +3
Query: 267 FSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALR 377
+SQFG+I DI+ M+ T + RG FV F + A++
Sbjct: 43 YSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +3
Query: 267 FSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALR 377
+SQFG+I DI+ M+ T + RG FV F + A++
Sbjct: 5 YSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 44
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +3
Query: 267 FSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALR 377
+SQFG+I DI+ M+ T + RG FV F + A++
Sbjct: 5 YSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 44
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +3
Query: 267 FSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALR 377
+SQFG+I DI+ M+ T + RG FV F + A++
Sbjct: 43 YSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +3
Query: 267 FSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALR 377
+SQFG+I DI+ M+ T + RG FV F + A++
Sbjct: 43 YSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
>Z69904-3|CAA93780.1| 372|Caenorhabditis elegans Hypothetical
protein ZK20.3 protein.
Length = 372
Score = 29.1 bits (62), Expect = 3.8
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Frame = -3
Query: 551 KSARIFVFLFLPIISTFR*LWTFRSFLK-----CSFTFCYYITINF*I-LNSHWFIIEWK 390
K+ F+F FLP+I F+ ++ F SF+ S TF +NF + LN I E K
Sbjct: 19 KTPSHFLFCFLPLILFFKMVFLFCSFINNQMMVLSVTFRTLTQVNFNLELNEDQTIAEVK 78
Query: 389 SLHAPQ 372
+L A +
Sbjct: 79 ALVASE 84
>AF022985-6|AAB69963.1| 457|Caenorhabditis elegans Hypothetical
protein T15B7.7 protein.
Length = 457
Score = 29.1 bits (62), Expect = 3.8
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Frame = -3
Query: 575 STRDTMPNKSARIFVFLFLPIISTFR*LWTFRSFLKCSFTFCYYITINF------*ILNS 414
++++TM +KSA F LFLP +FR +RSF+ +T++F N+
Sbjct: 46 NSQNTMFHKSA--FHTLFLPTTVSFRTTDIWRSFISQKILHLSGLTVSFVPTNAVQFRNA 103
Query: 413 HWFIIEWKSLHAPQSNSG-T*NFLENNKCLT 324
H ++ + K +SG FL N KC T
Sbjct: 104 HNYLKDLKDEKQVYEDSGRMIEFLHNWKCST 134
>U80025-2|AAD32270.3| 806|Caenorhabditis elegans Hypothetical
protein F02C9.2 protein.
Length = 806
Score = 28.7 bits (61), Expect = 5.0
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Frame = -3
Query: 575 STRDTMPNKSARIFVFLFLPIISTFR*LWTFRSFLKCSFTFCYYITINF------*ILNS 414
++++TM +KSA F LFLP +FR +RSF+ +T++F N+
Sbjct: 277 NSQNTMFHKSA--FHTLFLPTTVSFRTTDIWRSFISQKILHLSGLTVSFVPTNAVHFRNA 334
Query: 413 HWFIIEWKSLHAPQSNSG-T*NFLENNKCLT 324
H ++ ++K +SG FL N C T
Sbjct: 335 HNYLKDFKDEQQVYEDSGRIIEFLHNWNCKT 365
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 267 FSQFGQILD---IVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSKID 437
F+ FG IL + T + FV ++ SAT A+ +M GF K +++Q K+D
Sbjct: 355 FAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL-KVD 413
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 267 FSQFGQILD---IVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSKID 437
F+ FG IL + T + FV ++ SAT A+ +M GF K +++Q K+D
Sbjct: 519 FAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL-KVD 577
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 267 FSQFGQILD---IVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSKID 437
F+ FG IL + T + FV ++ SAT A+ +M GF K +++Q K+D
Sbjct: 519 FAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL-KVD 577
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 267 FSQFGQILD---IVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSKID 437
F+ FG IL + T + FV ++ SAT A+ +M GF K +++Q K+D
Sbjct: 448 FAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL-KVD 506
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 267 FSQFGQILD---IVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSKID 437
F+ FG IL + T + FV ++ SAT A+ +M GF K +++Q K+D
Sbjct: 519 FAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL-KVD 577
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,467,559
Number of Sequences: 27780
Number of extensions: 351623
Number of successful extensions: 839
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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