Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2j18
         (319 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   0.91 
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    25   2.1  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    25   2.1  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    25   2.8  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   3.7  
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    23   8.5  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    23   8.5  

>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 26.6 bits (56), Expect = 0.91
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 52  TLAV*N*FLCICYFFVTFVTFYSEKSILTVARLLICQ 162
           T ++ N FL ICY F+   T  S+ S+    R L  Q
Sbjct: 25  TFSLSNLFLAICYLFLNVRTVSSDSSVSLYDRQLFDQ 61


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 2   SFLK*IV*YLIFVLFLTLWLYKISFFAFVI 91
           +++  ++ Y IFV+F+ +W+Y   +  F I
Sbjct: 269 NYVNTVIVYPIFVIFVFVWIYMRHYLNFKI 298


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 199 LTITQSVVKKSMADISIGVQLSKYFFRNKMSRM*QKNNKCKET 71
           LTI    V  +   +++G+ L K +F NK   M   NNK + T
Sbjct: 83  LTILLFGVLSTPITVNLGLTLFKLYFYNKRYDMVITNNKLRMT 125


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 99  HIRDILFRKKYFDSCTPIDMSAMD 170
           H RD + RKK++  C P   ++ D
Sbjct: 531 HARDAIHRKKFWFRCNPFPDASTD 554


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = +2

Query: 197 KWCCVV*ANLWNNFESCAYNNVCDCEH 277
           +W C+  + LW N+    ++   D  H
Sbjct: 639 QWACLCISQLWENYSEAKWSGTRDNAH 665


>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 230 NNFESCAYNNVCDCEHYLI 286
           +NF SC+Y  + DC   L+
Sbjct: 479 SNFTSCSYTAINDCNGNLL 497


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 111  ILFRKKYFDSCTPIDMSAMDFLTTDCVIVS-GVVLC 215
            I F +++      +++ AMDF+ + C++ S   +LC
Sbjct: 1693 IQFIREFMCKVVEMNLFAMDFILSHCILFSLTPILC 1728


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,271,538
Number of Sequences: 5004
Number of extensions: 24464
Number of successful extensions: 71
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)