Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2j18
         (319 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0137 + 27955876-27956000,27957626-27957714,27957963-279580...    30   0.34 
01_05_0251 + 19952882-19955459,19956209-19956245,19956370-199565...    27   2.4  
07_01_1160 - 10986404-10986760,10986853-10986987,10987074-10987997     26   5.6  
05_01_0383 + 2990812-2990855,2991364-2991463,2991554-2991622,299...    26   7.4  
01_06_1125 + 34683184-34684776                                         26   7.4  
05_03_0364 + 13007002-13007538,13007965-13008393,13008649-130089...    25   9.7  
03_03_0263 + 15984244-15985321,15985411-15986144                       25   9.7  
02_05_0748 - 31463559-31464764                                         25   9.7  

>05_07_0137 +
           27955876-27956000,27957626-27957714,27957963-27958054,
           27959338-27959419,27960038-27960454,27960539-27960876,
           27961066-27961233
          Length = 436

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 105 RDILFRKKYF-DSCTPIDMSAMDFLTTDCVIVSGVVLCE 218
           ++I F K+YF DSC P+D S +  LT     ++ VV+ +
Sbjct: 339 KNIFFTKRYFRDSCLPVDGSYLKDLTVIVADLAKVVIID 377


>01_05_0251 + 19952882-19955459,19956209-19956245,19956370-19956586,
            19957063-19957221,19957397-19957516,19957609-19957719
          Length = 1073

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 26   YLIFVLFLTLWLYKISFFAFVIFLSHS*HFIPKKV 130
            Y+ F L L+++L  +SFFA+ + L     +IP  +
Sbjct: 1008 YMPFYLSLSMFLMSVSFFAYGVLLHDFFIYIPNGI 1042


>07_01_1160 - 10986404-10986760,10986853-10986987,10987074-10987997
          Length = 471

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 311 LKNCNVLYLLNNAHSRTRCYTHSSQNCSIS*LTQHNTTYN 192
           L NCN  +L N  H R +    +SQN   +  T H + ++
Sbjct: 415 LNNCNQKWLANQ-HRRLQLEKKASQNAQFTFKTTHTSDFS 453


>05_01_0383 +
           2990812-2990855,2991364-2991463,2991554-2991622,
           2991724-2991960,2992045-2992228,2992307-2992442,
           2992529-2992691,2992958-2993108,2993154-2993278,
           2993349-2993504,2993792-2993860,2993951-2994019,
           2994127-2994264,2994626-2994773,2994856-2994866,
           2995212-2995352,2995441-2995569,2995860-2995899,
           2996020-2996348,2996902-2996919
          Length = 818

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 87  LFFCHIRDILFRKKYFDSCTPIDMSAMDFLTTDCV 191
           L+ CH    LF+ K   S +  D+   + L  DCV
Sbjct: 589 LYTCHFEQGLFKAKEVFSFSQDDLVTEEILILDCV 623


>01_06_1125 + 34683184-34684776
          Length = 530

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 245 CAYNNVCDCEHYLINKER 298
           C Y NV D EH L++ E+
Sbjct: 227 CRYKNVQDAEHLLLSSEK 244


>05_03_0364 +
           13007002-13007538,13007965-13008393,13008649-13008990,
           13009904-13010035,13010432-13010596
          Length = 534

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 177 LRNPWLTYQ*ACNCQNTFFGIKCHECDKKITNAKKLILYSQSVR 46
           +R  W+ Y   C C   F G    +C+KK+ N+     +S+ +R
Sbjct: 272 VRYKWIPY--FCFCCG-FIGHSDKDCEKKVANSDAPYQFSEELR 312


>03_03_0263 + 15984244-15985321,15985411-15986144
          Length = 603

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 273 SQSHTLLYAQLSKLFHKLAHTTQHHLQSHSLSLRNPWLT 157
           S+SH     +L  + H + H    HL+  SL    PWL+
Sbjct: 221 SESHAAEGEELD-VDHDIQHHVDRHLEDQSLPPVPPWLS 258


>02_05_0748 - 31463559-31464764
          Length = 401

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = -2

Query: 276 CSQSHTLLYAQLSKLFHKLAHTTQHHLQSHSLSLRNPWLTYQ*ACNCQ 133
           CS+S     A +++ FH L  + + + +   L +   W+ +  +CN Q
Sbjct: 78  CSRSDYGSIASVNRNFHSLVRSGELYKERRQLGIAEHWVYF--SCNVQ 123


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,085,764
Number of Sequences: 37544
Number of extensions: 124156
Number of successful extensions: 324
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)