Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2j18
(319 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY714129-1|AAU94938.1| 4186|Homo sapiens anchor protein protein. 28 5.2
AF231023-1|AAF61929.1| 3312|Homo sapiens protocadherin Flamingo ... 28 5.2
AB011536-1|BAA32464.1| 1364|Homo sapiens MEGF2 protein. 28 5.2
Z26653-1|CAA81394.1| 3110|Homo sapiens laminin M chain (merosin)... 27 9.1
U66796-1|AAB18388.1| 3110|Homo sapiens laminin alpha 2 chain pro... 27 9.1
AL669984-2|CAI16682.1| 3122|Homo sapiens laminin, alpha 2 (meros... 27 9.1
AL590613-1|CAH70771.1| 3122|Homo sapiens laminin, alpha 2 (meros... 27 9.1
AL583853-1|CAH70492.1| 3122|Homo sapiens laminin, alpha 2 (meros... 27 9.1
AL513527-1|CAI15185.1| 3122|Homo sapiens laminin, alpha 2 (meros... 27 9.1
AL445439-1|CAH72952.1| 3122|Homo sapiens laminin, alpha 2 (meros... 27 9.1
AL356124-1|CAI22470.1| 3122|Homo sapiens laminin, alpha 2 (meros... 27 9.1
>AY714129-1|AAU94938.1| 4186|Homo sapiens anchor protein protein.
Length = 4186
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 96 CHIRDILFRKKYFDSCTPIDMSAMDFLTTDCVIVSGVVLC 215
CH ++ +R + DSC P D + + C SG C
Sbjct: 2129 CHCKEFHYRPRGSDSCLPCDCYPVGSTSRSCAPHSGQCPC 2168
>AF231023-1|AAF61929.1| 3312|Homo sapiens protocadherin Flamingo 1
protein.
Length = 3312
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 96 CHIRDILFRKKYFDSCTPIDMSAMDFLTTDCVIVSGVVLC 215
CH ++ +R + DSC P D + + C SG C
Sbjct: 2059 CHCKEFHYRPRGSDSCLPCDCYPVGSTSRSCAPHSGQCPC 2098
>AB011536-1|BAA32464.1| 1364|Homo sapiens MEGF2 protein.
Length = 1364
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 96 CHIRDILFRKKYFDSCTPIDMSAMDFLTTDCVIVSGVVLC 215
CH ++ +R + DSC P D + + C SG C
Sbjct: 106 CHCKEFHYRPRGSDSCLPCDCYPVGSTSRSCAPHSGQCPC 145
>Z26653-1|CAA81394.1| 3110|Homo sapiens laminin M chain (merosin)
protein.
Length = 3110
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2
Query: 144 CNCQNTFFGIKCHECDK 94
CNC F G KC EC +
Sbjct: 1079 CNCHPKFSGAKCTECSR 1095
>U66796-1|AAB18388.1| 3110|Homo sapiens laminin alpha 2 chain protein.
Length = 3110
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2
Query: 144 CNCQNTFFGIKCHECDK 94
CNC F G KC EC +
Sbjct: 1079 CNCHPKFSGAKCTECSR 1095
>AL669984-2|CAI16682.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
congenital muscular dystrophy) protein.
Length = 3122
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2
Query: 144 CNCQNTFFGIKCHECDK 94
CNC F G KC EC +
Sbjct: 1079 CNCHPKFSGAKCTECSR 1095
>AL590613-1|CAH70771.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
congenital muscular dystrophy) protein.
Length = 3122
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2
Query: 144 CNCQNTFFGIKCHECDK 94
CNC F G KC EC +
Sbjct: 1079 CNCHPKFSGAKCTECSR 1095
>AL583853-1|CAH70492.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
congenital muscular dystrophy) protein.
Length = 3122
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2
Query: 144 CNCQNTFFGIKCHECDK 94
CNC F G KC EC +
Sbjct: 1079 CNCHPKFSGAKCTECSR 1095
>AL513527-1|CAI15185.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
congenital muscular dystrophy) protein.
Length = 3122
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2
Query: 144 CNCQNTFFGIKCHECDK 94
CNC F G KC EC +
Sbjct: 1079 CNCHPKFSGAKCTECSR 1095
>AL445439-1|CAH72952.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
congenital muscular dystrophy) protein.
Length = 3122
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2
Query: 144 CNCQNTFFGIKCHECDK 94
CNC F G KC EC +
Sbjct: 1079 CNCHPKFSGAKCTECSR 1095
>AL356124-1|CAI22470.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
congenital muscular dystrophy) protein.
Length = 3122
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2
Query: 144 CNCQNTFFGIKCHECDK 94
CNC F G KC EC +
Sbjct: 1079 CNCHPKFSGAKCTECSR 1095
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,407,876
Number of Sequences: 237096
Number of extensions: 801225
Number of successful extensions: 2832
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2832
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1511340428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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