Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2j16
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces ...    95   1e-20
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    30   0.35 
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    27   2.4  
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom...    27   3.2  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   5.6  
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||...    25   7.5  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    25   7.5  
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb...    25   9.9  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   9.9  

>SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 94.7 bits (225), Expect = 1e-20
 Identities = 57/161 (35%), Positives = 91/161 (56%), Gaps = 4/161 (2%)
 Frame = +3

Query: 198 ILLMIPVTSFTLGSWQVYRWQWKLGLIDMMQAKSNAVPIDMPKDFSE--LEKMEYLPVKV 371
           +L  +P+ +F LG+WQV R +WK+G+I+ +  +     I +PK  +E   +K+E+  V +
Sbjct: 42  LLSAVPIVTFALGTWQVKRREWKMGIINTLTERLQQPAILLPKTVTEQDTKKLEWTRVLL 101

Query: 372 KGEFLHEKEILIGPRALIEESSITNRVGSLVSDPKKNQ-GWLVITPFKXADTGEVILINR 548
           +G F H++E+L+GPR                   K+ Q G+ V+TPF   D G  IL+NR
Sbjct: 102 RGVFCHDQEMLVGPRT------------------KEGQPGYHVVTPF-ILDDGRRILVNR 142

Query: 549 GWIHQNLRPKEKREP-SLIKGPVELTGVVRLTEKRAPFMPK 668
           GWI ++   +  R+P SL KGPV + G++R    +  FM K
Sbjct: 143 GWIARSFAEQSSRDPSSLPKGPVVIEGLLRQHTDKPRFMMK 183


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 462 VSDP--KKNQGWLVITPFKXADTGEVILINRGWIHQNLRPKEKREPSLIKGPVEL 620
           V++P   K+ GW+ +  +   DT +   + R +    + PK  R   L+K PV++
Sbjct: 510 VNEPIYSKSDGWIPVMVYPFIDTKQTPFMGRAFAVPFIEPKWGRYEILVKKPVKI 564


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 196 HLYISVGSSFLLTFCDRIIFAI-FVLNLTLLTDPFLIKVLEMIFK 65
           HL+ ++ S FLL F  R++F +  +L         L+ VL  IFK
Sbjct: 287 HLHDNLNSYFLLKFFVRVLFGVCMILIWKSFAKQALLAVLPPIFK 331


>SPCC1223.08c |dfr1||dihydrofolate reductase
           Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -2

Query: 481 FFFGSDTSEPTLLVIELSSMSALGPINISFSCKNS-PFTFTGKYSIFSNSEKS 326
           F F + T EPT    +L+ + A+   N+    KNS P+    + + F+N   S
Sbjct: 218 FMFSAPTKEPTKHPRDLTMIVAVSSPNLGIGKKNSMPWHIKQEMAYFANVTSS 270


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 532 TSPVSANLNGVITNHPWFFFGSDTSEPTLLVIELSSMSALGPIN 401
           TSP  AN N     +   FFGS +  PT+  I  S   +L  I+
Sbjct: 283 TSPAFANGNSPTLKNDSSFFGSASVRPTVSPIGTSFRQSLPDIS 326


>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
 Frame = +3

Query: 336 ELEKMEYLPVKVKGEFLHE---KEILIGPRALIEESSITNRVGSLVSDPKKNQG-WLVIT 503
           EL     +  +  GE+L E   K++   P  L   + +  R   +V   +  +  +  + 
Sbjct: 107 ELTDFGRVTTRTLGEYLRERYVKQLKFLPDELNNYADVYMRATPMVRALESLEHVFSGLY 166

Query: 504 PFKXADTGEVILINRGWIHQNLRPKEKREPSLIK 605
           P      G  ++  R W  +NL P E   P L++
Sbjct: 167 PESKRKMGLPVIFTRNWSDENLLPNENNCPRLVQ 200


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 22/92 (23%), Positives = 40/92 (43%)
 Frame = -2

Query: 556 IQPLFIKMTSPVSANLNGVITNHPWFFFGSDTSEPTLLVIELSSMSALGPINISFSCKNS 377
           +QPL   MT PV +++    T +    +G D++  T         + L P     +  N 
Sbjct: 294 LQPLRPSMTGPVPSSMGSEATLNMPSTYGIDSNLYTNSNSSSIVQNPLQPARTGPAAIN- 352

Query: 376 PFTFTGKYSIFSNSEKSFGMSIGTALDLACIM 281
            + +T  YS+ S S  +    +G++   A +M
Sbjct: 353 -YNYTTNYSVSSPSVTNPFFDVGSSTQNASLM 383


>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +3

Query: 309 PIDMPKDFSELEKMEYLPVKVKGEFLHEKEILIGPRALIEESSITNRVGSLVSDPKKNQG 488
           P+ +  D S +  M+ L V  K      ++I   P ALI +    +    L S    N  
Sbjct: 294 PLILGNDVSSMSPMDKLIVSNKELISINQDIGTNPAALIWKKKYGDEYIELFSGRLSNND 353

Query: 489 WLV 497
           W+V
Sbjct: 354 WVV 356


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = -2

Query: 538 KMTS---PVSANLNGVITNHPWFFFGSDTSEPTLLVIELSSMS 419
           KMTS   P S   NG      W+FF  +     L VI LS+ S
Sbjct: 191 KMTSQAAPASLTFNGEEAISQWYFFHFNLQLQLLRVIFLSTYS 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,629,024
Number of Sequences: 5004
Number of extensions: 53975
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)