Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2j16
(668 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006651-9|AAF39867.1| 323|Caenorhabditis elegans Surfeit homol... 125 3e-29
Z49207-7|CAA89072.1| 512|Caenorhabditis elegans Hypothetical pr... 29 3.9
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 29 3.9
AL023811-1|CAA19422.2| 947|Caenorhabditis elegans Hypothetical ... 29 3.9
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 29 3.9
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 29 3.9
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 29 3.9
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 29 3.9
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 29 3.9
Z82051-10|CAB04822.2| 577|Caenorhabditis elegans Hypothetical p... 28 6.9
AL021175-11|CAA15973.2| 577|Caenorhabditis elegans Hypothetical... 28 6.9
AC006831-1|AAF39995.1| 558|Caenorhabditis elegans Hypothetical ... 28 6.9
Z74026-3|CAA98418.1| 457|Caenorhabditis elegans Hypothetical pr... 27 9.1
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr... 27 9.1
AF183390-1|AAF97864.1| 457|Caenorhabditis elegans Rh-like prote... 27 9.1
AF016443-1|AAC24277.1| 366|Caenorhabditis elegans Hypothetical ... 27 9.1
>AC006651-9|AAF39867.1| 323|Caenorhabditis elegans Surfeit homolog
protein 1 protein.
Length = 323
Score = 125 bits (301), Expect = 3e-29
Identities = 64/159 (40%), Positives = 99/159 (62%), Gaps = 4/159 (2%)
Frame = +3
Query: 198 ILLMIPVTSFTLGSWQVYRWQWKLGLIDMMQAKSNAVPIDMPKDFS--ELEKMEYLPVKV 371
++L IPV +F+LG WQ +R +WKL LI+ ++ + N ++P+D S LE +EY V V
Sbjct: 87 LMLTIPVFAFSLGIWQTFRLKWKLDLIEHLKGRLNQTAQELPEDLSCESLEPLEYCRVTV 146
Query: 372 KGEFLHEKEILIGPRALIEESSITNRV-GSLVSDPK-KNQGWLVITPFKXADTGEVILIN 545
GEFLHEKE +I PR + T+ GS++S+ + + G +ITPF+ ++G++ILIN
Sbjct: 147 TGEFLHEKEFIISPRGRFDPGKKTSAAAGSMLSENEMSSHGGHLITPFRLKNSGKIILIN 206
Query: 546 RGWIHQNLRPKEKREPSLIKGPVELTGVVRLTEKRAPFM 662
RGW+ E R+ + +G + L +VR TEKR F+
Sbjct: 207 RGWLPSFYFDPETRQKTNPRGTLTLPAIVRKTEKRPQFV 245
>Z49207-7|CAA89072.1| 512|Caenorhabditis elegans Hypothetical
protein R07E3.5a protein.
Length = 512
Score = 28.7 bits (61), Expect = 3.9
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Frame = +3
Query: 198 ILLMIPVTSFTLGSWQ------VYRWQWKLGLIDMMQAKSNAVPIDMPKDFSELEKMEYL 359
+L+ + VT TLG + VY ++W L + + + +V DMP+DF +
Sbjct: 12 LLIFLAVTGKTLGLREYYVNTLVYIFEWGATLNEQYEEEEGSVEEDMPEDFQHKKPRRSS 71
Query: 360 PVKVKGEFLHEKEILIGPRALIEESSITNRVGSLVS 467
G EK +I A + E+++ + VS
Sbjct: 72 SASDLGIINREKSDIID--AKLHETNVPEAKQTTVS 105
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = -2
Query: 403 NISFSCKNSPF-TFTGKYSIFSNSEKSFGMSIGTALDLACIMSMSPSFHCHLYTCHEPRV 227
N + K F T G+ +F+ ++ +SIG L L+C + SP H Y+ E
Sbjct: 3069 NTEGTSKTEAFLTVQGEAPVFTKELQNKELSIGEKLVLSCSVKGSPQPHVDFYSFSE-TT 3127
Query: 226 KEVTGIISKIHLYI 185
K T I S + I
Sbjct: 3128 KVETKITSSSRIAI 3141
>AL023811-1|CAA19422.2| 947|Caenorhabditis elegans Hypothetical
protein C51F7.1 protein.
Length = 947
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 130 ILQILCDHRRSKEKKNRLKYTNGSY 204
ILQ+L +HR+S+ + N + TNG Y
Sbjct: 788 ILQLLKEHRQSQGQLNAITMTNGIY 812
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = -2
Query: 403 NISFSCKNSPF-TFTGKYSIFSNSEKSFGMSIGTALDLACIMSMSPSFHCHLYTCHEPRV 227
N + K F T G+ +F+ ++ +SIG L L+C + SP H Y+ E
Sbjct: 2429 NTEGTSKTEAFLTVQGEAPVFTKELQNKELSIGEKLVLSCSVKGSPQPHVDFYSFSE-TT 2487
Query: 226 KEVTGIISKIHLYI 185
K T I S + I
Sbjct: 2488 KVETKITSSSRIAI 2501
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = -2
Query: 403 NISFSCKNSPF-TFTGKYSIFSNSEKSFGMSIGTALDLACIMSMSPSFHCHLYTCHEPRV 227
N + K F T G+ +F+ ++ +SIG L L+C + SP H Y+ E
Sbjct: 3069 NTEGTSKTEAFLTVQGEAPVFTKELQNKELSIGEKLVLSCSVKGSPQPHVDFYSFSE-TT 3127
Query: 226 KEVTGIISKIHLYI 185
K T I S + I
Sbjct: 3128 KVETKITSSSRIAI 3141
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = -2
Query: 403 NISFSCKNSPF-TFTGKYSIFSNSEKSFGMSIGTALDLACIMSMSPSFHCHLYTCHEPRV 227
N + K F T G+ +F+ ++ +SIG L L+C + SP H Y+ E
Sbjct: 3069 NTEGTSKTEAFLTVQGEAPVFTKELQNKELSIGEKLVLSCSVKGSPQPHVDFYSFSE-TT 3127
Query: 226 KEVTGIISKIHLYI 185
K T I S + I
Sbjct: 3128 KVETKITSSSRIAI 3141
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = -2
Query: 403 NISFSCKNSPF-TFTGKYSIFSNSEKSFGMSIGTALDLACIMSMSPSFHCHLYTCHEPRV 227
N + K F T G+ +F+ ++ +SIG L L+C + SP H Y+ E
Sbjct: 2429 NTEGTSKTEAFLTVQGEAPVFTKELQNKELSIGEKLVLSCSVKGSPQPHVDFYSFSE-TT 2487
Query: 226 KEVTGIISKIHLYI 185
K T I S + I
Sbjct: 2488 KVETKITSSSRIAI 2501
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = -2
Query: 403 NISFSCKNSPF-TFTGKYSIFSNSEKSFGMSIGTALDLACIMSMSPSFHCHLYTCHEPRV 227
N + K F T G+ +F+ ++ +SIG L L+C + SP H Y+ E
Sbjct: 3069 NTEGTSKTEAFLTVQGEAPVFTKELQNKELSIGEKLVLSCSVKGSPQPHVDFYSFSE-TT 3127
Query: 226 KEVTGIISKIHLYI 185
K T I S + I
Sbjct: 3128 KVETKITSSSRIAI 3141
>Z82051-10|CAB04822.2| 577|Caenorhabditis elegans Hypothetical
protein T23D5.2 protein.
Length = 577
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +3
Query: 36 FNNIFKISRNLNIISNTFIKKGSVSNVRFNTNIANIMRSQKVKRKEEPTEIYKWILLMI 212
+ NIF+I ++ + N +K SVS N + + K KRKE E+ KW+ L +
Sbjct: 312 YTNIFRIYLSILVKQNK--RKRSVSQESSNKTVVS-----KSKRKELAEEVEKWMNLRV 363
>AL021175-11|CAA15973.2| 577|Caenorhabditis elegans Hypothetical
protein T23D5.2 protein.
Length = 577
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +3
Query: 36 FNNIFKISRNLNIISNTFIKKGSVSNVRFNTNIANIMRSQKVKRKEEPTEIYKWILLMI 212
+ NIF+I ++ + N +K SVS N + + K KRKE E+ KW+ L +
Sbjct: 312 YTNIFRIYLSILVKQNK--RKRSVSQESSNKTVVS-----KSKRKELAEEVEKWMNLRV 363
>AC006831-1|AAF39995.1| 558|Caenorhabditis elegans Hypothetical
protein ZK121.2 protein.
Length = 558
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Frame = -2
Query: 397 SFSCKNSPFTFTGKYSIFSNSEKSFGMSIG-------TALDLACIMSMSPSFHCHLYTCH 239
SF C N+ + TGK+ + +E GM+ G ++ + C S H H + H
Sbjct: 344 SFDCSNNSYLCTGKHPMMRKAESFGGMANGISHGCYEQSVPVVCGTPPSVMVHHHHHHAH 403
Query: 238 --EPRVKEVTG 212
+P TG
Sbjct: 404 IQQPPTSNYTG 414
>Z74026-3|CAA98418.1| 457|Caenorhabditis elegans Hypothetical
protein B0240.1 protein.
Length = 457
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 211 IISKIHLYISVGSSFLLTFCDRIIFAIFVLNLTL 110
+ +HL I VG FL+ F R F+ +NL L
Sbjct: 49 LFQDVHLMIFVGFGFLMAFLKRYGFSAVSVNLLL 82
>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical
protein F30H5.3 protein.
Length = 1599
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 239 MASVQMAMEAGAH*HDAS*IQCCPNR 316
MA+V+ AME H AS CCPNR
Sbjct: 303 MANVKTAMEGVYDIHPASDGICCPNR 328
>AF183390-1|AAF97864.1| 457|Caenorhabditis elegans Rh-like
protein-1 protein.
Length = 457
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 211 IISKIHLYISVGSSFLLTFCDRIIFAIFVLNLTL 110
+ +HL I VG FL+ F R F+ +NL L
Sbjct: 49 LFQDVHLMIFVGFGFLMAFLKRYGFSAVSVNLLL 82
>AF016443-1|AAC24277.1| 366|Caenorhabditis elegans Hypothetical
protein C17E7.5 protein.
Length = 366
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 499 ITNHPWFFFGSDTSEPTLLVIELSS 425
ITNH W FFG TS L+ ++ S
Sbjct: 169 ITNHEWSFFGIYTSIEFLMSLDFMS 193
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,322,481
Number of Sequences: 27780
Number of extensions: 294633
Number of successful extensions: 847
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -