Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2j12
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    90   3e-19
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   3.5  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   8.1  
SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces pomb...    25   8.1  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 90.2 bits (214), Expect = 3e-19
 Identities = 46/88 (52%), Positives = 57/88 (64%)
 Frame = +1

Query: 76  LQEKFDQAAANVKNLXALPTDAQLLNLYAHFKQATVGDADPANRPGLLXLKGKAKFDAWH 255
           +   F+QAAA+VK L   P   +LL LYA FKQATVGD +   +PGLL LKGK K++AW 
Sbjct: 1   MSSTFEQAAADVKELKETPNSDELLKLYALFKQATVGDNN-TEKPGLLDLKGKFKWNAWE 59

Query: 256 KLAGTSKEDAQKAYIEIVEGLIASIGLK 339
           +L G SKEDA   YI  V+ L    G+K
Sbjct: 60  ELKGKSKEDAASEYISFVDELKTKYGMK 87


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
 Frame = +1

Query: 88   FDQAAANVKNLXALPTDAQLLNLYAHFKQ--ATVGDADPANRPGL-LXLKGKAKFDAWHK 258
            F Q AA+++    +  DA LLN+Y +F+Q  + V +A    +  L   +K +    +W  
Sbjct: 3302 FSQHAASLRICHGI--DAMLLNIYHYFEQFLSKVSEAIHTQKQSLENSIKERILLMSWKD 3359

Query: 259  L-AGTSKEDAQKAYIEIVEGL 318
                  KE A+K++ E+ + L
Sbjct: 3360 TNVYALKESAKKSHAELFKVL 3380


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 469 HFCLKCFFFKNTNSY 513
           H+CLKCF  K   SY
Sbjct: 400 HYCLKCFQVKPPRSY 414


>SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 178

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 91  DQAAANVKNLXALPTDAQLLNLYAHFKQATVGDAD 195
           DQ   NV++  + P   QL+ L+    +A V DAD
Sbjct: 40  DQFFRNVRDTISEPKFTQLMELWLEKSRAEVPDAD 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,728,611
Number of Sequences: 5004
Number of extensions: 51696
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)