Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2j11
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          25   0.74 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      25   0.74 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.3  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   3.0  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   4.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   4.0  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.9  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   9.1  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.1  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 380 ILLCEESSWYLHSHVAPEER*QY*T 306
           +L    + WYL  H  PE+R  Y T
Sbjct: 199 LLAANYTGWYLTKHNVPEQRLNYFT 223


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 380 ILLCEESSWYLHSHVAPEER*QY*T 306
           +L    + WYL  H  PE+R  Y T
Sbjct: 199 LLAANYTGWYLTKHNVPEQRLNYFT 223


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +2

Query: 557 SKRTYY---PGWRCIRRSTNGYNHSHAGIRSFGRNCNGLEV 670
           SKR+ Y   P ++  +RS      SH G R   R CNGLE+
Sbjct: 362 SKRSDYDSRPQYQIDKRSMG----SHHGQRVMVRTCNGLEL 398


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 668 LPAHCSFCQNS*YRHGYDCTHL 603
           LP  C FC+N+     Y   HL
Sbjct: 36  LPTECVFCRNNGEEEAYYRKHL 57


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 213 SSLGVAILAMTDVSRKNDTNVEVYNWDKKTQGLIL 317
           ++ G+  L    V   + TN  VY  D+K +GLI+
Sbjct: 184 ATTGMGELVSLAVQAIDRTNTMVYIADEKGEGLIM 218


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 702 VTAGLWFWFSAS 737
           V AG+W W S S
Sbjct: 409 VNAGMWMWLSCS 420


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 438 TARKVTHLLTMRPAVLVFPHTS 373
           T  ++TH+L   PA+++    S
Sbjct: 15  TLNRITHILANSPAIIILGQDS 36


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 438 TARKVTHLLTMRPAVLVFPHTS 373
           T  ++TH+L   PA+++    S
Sbjct: 53  TLNRITHILANSPAIIILGQDS 74


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 665 PAHCSFCQNS*YR 627
           P+HC  CQN  Y+
Sbjct: 191 PSHCVVCQNFFYQ 203


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = +2

Query: 335 LHDYADTSWTPRKEVWGKTNTAGRIVSKWVTLRAVANG 448
           L  Y + SW   +   G T+     + +W  L  + NG
Sbjct: 105 LEPYPNWSWAKNQNCSGITSVYRIAIDEWDRLWVLDNG 142


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +3

Query: 288 WDKKTQGLILSSFFW-GYMTMQIP 356
           WD   +G I+ SF W G +   +P
Sbjct: 147 WDVDKRGKIMLSFAWIGSVVCSLP 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,856
Number of Sequences: 438
Number of extensions: 4838
Number of successful extensions: 18
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)