Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2j09
         (345 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0808 + 11412981-11413259                                         29   1.3  
08_01_0034 - 253972-254916                                             27   3.0  
06_01_1160 - 9868340-9868360,9868639-9868986                           27   3.9  
03_06_0084 + 31536286-31536718,31536907-31536983,31537380-315374...    27   3.9  
03_05_0733 - 27241021-27241767                                         26   6.9  
01_05_0168 - 18865821-18866843                                         26   6.9  
07_03_1502 + 27010328-27010509,27010715-27010973,27011989-270129...    26   9.1  
01_02_0069 - 10813467-10813475,10813476-10813564,10813865-108139...    26   9.1  

>03_02_0808 + 11412981-11413259
          Length = 92

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 77  IRNLLRAN-NQIFKNVAQQRNMSVICTPPRNKVSRG 181
           +R +LR N + +F    QQR M  +  PPR K   G
Sbjct: 50  VRKVLRENQDMVFIQQPQQREMGGLIMPPRGKTKLG 85


>08_01_0034 - 253972-254916
          Length = 314

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -3

Query: 217 AHHHQAGEEDHLTSGNLVSWRSADNAHVPLLGDILKDLVVSAK*ISN 77
           AH     E  HL  G L    S   A +  L D+  D+V   K +S+
Sbjct: 263 AHREDMAERAHLVKGCLAMLSSGAEAVIAELDDLFDDIVEGRKMLSD 309


>06_01_1160 - 9868340-9868360,9868639-9868986
          Length = 122

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 92  RANNQIFKNVAQQRNMSVICTPPRNK 169
           +A  Q+ +  A  RNM VICT P  K
Sbjct: 84  QAGRQVGRRPASIRNMRVICTTPNYK 109


>03_06_0084 +
           31536286-31536718,31536907-31536983,31537380-31537428,
           31537778-31538048,31540876-31541104,31541511-31541750
          Length = 432

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 208 HQAGEEDHLTSGNL 167
           HQ  EEDHL +GNL
Sbjct: 352 HQGAEEDHLITGNL 365


>03_05_0733 - 27241021-27241767
          Length = 248

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 268 VAVMLDIDQHPGWDGRPAHHHQAGEEDHLTSGNLVS 161
           +AV  D+    G+  R  H H     DHL  G+LV+
Sbjct: 56  LAVRPDVFSVAGFANRTGHWHALRGNDHLFRGDLVA 91


>01_05_0168 - 18865821-18866843
          Length = 340

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +2

Query: 200 GLMVVGWSAIPAWVL-VNIKHYRDK 271
           G+ + GW+ +P W L + + HY  K
Sbjct: 161 GITMKGWAVVPRWKLRLRVSHYLRK 185


>07_03_1502 +
           27010328-27010509,27010715-27010973,27011989-27012975,
           27013388-27013822
          Length = 620

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 75  ELEIYFALTTKSLRMSPNKGT*ALSALRQETRFPE 179
           ELE+   L+++  R+SP   + AL   ++E RF E
Sbjct: 488 ELEVLVGLSSQICRVSPKSFSKALEQGQKEARFVE 522


>01_02_0069 -
           10813467-10813475,10813476-10813564,10813865-10813988,
           10814227-10814305,10815298-10815388,10815808-10815904,
           10816197-10816241,10816369-10816464
          Length = 209

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 119 VAQQRNMSVICTPPRNKVSRGEMIFLAGL 205
           +A++  + ++C PPR     G MI   G+
Sbjct: 158 IAEKNGLQLVCPPPRLCTDNGVMIAWTGI 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,775,936
Number of Sequences: 37544
Number of extensions: 168904
Number of successful extensions: 383
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)