Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2j02
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    29   0.68 
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    28   1.6  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    27   2.7  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    27   2.7  
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.3  
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    26   6.3  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    26   6.3  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    25   8.3  

>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
 Frame = +3

Query: 357 LDIPKVKKQSLQHLK-SSVEEDF-QFLSELAA-LKAVTEKVE-SGAISADNIIDFYNLRI 524
           L+I K KK      K ++V  D  Q+  E    + ++ EK++ +   + +N  +F+NL+ 
Sbjct: 546 LEIEKRKKYETNEAKITTVATDLSQYYRESKEYIASLYEKLDRTERNNKENENNFWNLKF 605

Query: 525 NSLHALRDFHG 557
           N L  LR FHG
Sbjct: 606 NLLTMLRSFHG 616


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +3

Query: 3   SFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDP 119
           SF  S    +SLL E+FSA LG    +++ WN LL   P
Sbjct: 32  SFLWSESAKKSLLNEVFSALLGY---DHTLWNTLLPERP 67


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
 Frame = +3

Query: 36  LLKEIFSASLGLSVEE---NSEWNGLLITDPFNTPEAVVEVYISGISS-LGSSADFKSKK 203
           LL+    A L  ++E    +++   L+ TD  +    ++ VY   IS  L  S     + 
Sbjct: 425 LLQHPLFAPLSHAIESLYGSTDAEALVATDEQDILMILICVYCLSISEKLPFSISMLVEG 484

Query: 204 YPLVVDEYEPDTFDVLKHRINQRFTN 281
           YP V +    + F++L     Q+FTN
Sbjct: 485 YPAVANPEGVEVFEILDEMFFQQFTN 510


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 704 ANSTARVDNVSCYSCDQN 651
           +NS  R+DNV+CY C ++
Sbjct: 57  SNSEERLDNVTCYMCTKS 74


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +3

Query: 405 SVEEDFQFLSELAALKAVTEKVESGAISADNIIDFYNLRINSLHALRDFHGPNS 566
           SV++D  FLSE+ ALK + E + S +    +       ++  L AL + +G +S
Sbjct: 166 SVKQDRVFLSEIYALKILVEFLSSKSQQERSDTSIVIGQLVGLEALYEKYGKDS 219


>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 210 LVVDEYEPDTFDVLKHRINQRFTNGGNKLVNINLS 314
           L +DE +P T      RI  R +NGG  ++ +NLS
Sbjct: 330 LQIDENKPTT------RIQVRLSNGGRTVLTVNLS 358


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +3

Query: 216 VDEY-EPDTFDVLKHRINQRFTNGGNKLVNINLSDSDQLLSYSNVLGDLDIPKVKKQSLQ 392
           V E+ + ++FD      ++ F    N  +N   S  + LLSY+ VLG      ++   L 
Sbjct: 364 VSEFVDENSFDSSSSCSSKVFLTTRNNSINSEDSAHEVLLSYNRVLGS----DIQGTILD 419

Query: 393 HLKSSVEEDFQFLSELAA 446
            +K   + D Q  SEL +
Sbjct: 420 RVKKGYQFDSQKNSELVS 437


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +3

Query: 177 SSADFKSKKYPLVVDEYEPDTFDVLKHRINQRFTNGGNKLVNI 305
           ++  ++  KY L    +   TFD+L H + +  +NGG+ ++ +
Sbjct: 139 TAQQYRQNKYQL---HFSRITFDLLLHFLFENVSNGGSIIIKL 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,667
Number of Sequences: 5004
Number of extensions: 53202
Number of successful extensions: 200
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)