Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2j02
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016441-1|AAB65911.3|  383|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    29   2.6  
Z69884-4|CAA93751.2|  913|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated p...    28   7.8  
AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein.     28   7.8  

>AF016441-1|AAB65911.3|  383|Caenorhabditis elegans Hypothetical
           protein M03F8.4 protein.
          Length = 383

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +3

Query: 333 SYSNVLGDLDIPKVKKQSLQHLKSSVEEDFQFLSELAALKAVTEKVESGAISADNII 503
           ++ N   +  +P +K ++L    S + ED    S+  ALK +  K++S   S  NI+
Sbjct: 243 TFFNDFDEFFVPVIKSRTLFETISGLFEDPTIGSQRTALKYINAKIKSAPYSLKNIV 299


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 35/106 (33%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
 Frame = -3

Query: 472 STFSVTAFKAASSLRNWKSSSTEDFKCCKDCFLT----FGISKSPNTFEYDKS*SESLKL 305
           S+ S TA    SS    +SS+T   +       T    + + K+  TF YD   S S+ L
Sbjct: 516 SSVSSTASSTQSSTSTQQSSTTTKSETTTSSDGTNPDFYFVEKATTTF-YD---STSVNL 571

Query: 304 IFTSLLPPLVKR*LILCFNTSKVSGSYSSTTKGYFLDLKSAELPRL 167
              S L  +  +  I C  TS  S +Y STTK      KS  +PRL
Sbjct: 572 TLNSGLGIIGYQTSIEC--TSPTSSNYVSTTKDGACFTKSVSMPRL 615


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 35/106 (33%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
 Frame = -3

Query: 472 STFSVTAFKAASSLRNWKSSSTEDFKCCKDCFLT----FGISKSPNTFEYDKS*SESLKL 305
           S+ S TA    SS    +SS+T   +       T    + + K+  TF YD   S S+ L
Sbjct: 516 SSVSSTASSTQSSTSTQQSSTTTKSETTTSSDGTNPDFYFVEKATTTF-YD---STSVNL 571

Query: 304 IFTSLLPPLVKR*LILCFNTSKVSGSYSSTTKGYFLDLKSAELPRL 167
              S L  +  +  I C  TS  S +Y STTK      KS  +PRL
Sbjct: 572 TLNSGLGIIGYQTSIEC--TSPTSSNYVSTTKDGACFTKSVSMPRL 615


>Z69884-4|CAA93751.2|  913|Caenorhabditis elegans Hypothetical
           protein F31F6.5 protein.
          Length = 913

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -1

Query: 384 TVF*LLEYLNHLTHLNMTKADQSHL 310
           TVF LLEYLN+L+ LN    D   L
Sbjct: 639 TVFFLLEYLNYLSELNAEVEDTERL 663


>U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated
           protein 83, isoform a protein.
          Length = 1041

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +3

Query: 402 SSVEEDFQFLSELAALKAVTEKVESGAISADNIIDFYNLRINSLHAL 542
           S VE      SE   LK +    E   I  +N    YNL ++SLH L
Sbjct: 8   SEVEMPNDISSEDHLLKVIESSAEEVDIFLENCSSLYNLILDSLHNL 54


>AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein.
          Length = 1041

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +3

Query: 402 SSVEEDFQFLSELAALKAVTEKVESGAISADNIIDFYNLRINSLHAL 542
           S VE      SE   LK +    E   I  +N    YNL ++SLH L
Sbjct: 8   SEVEMPNDISSEDHLLKVIESSAEEVDIFLENCSSLYNLILDSLHNL 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,968,629
Number of Sequences: 27780
Number of extensions: 284667
Number of successful extensions: 798
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)