Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2i22
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    27   2.5  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    26   3.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   7.5  
SPAC17C9.13c |cut8||tethering factor for nuclear proteasome Cut8...    25   7.5  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    25   7.5  

>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 365 RVEHFDAFD-KNGD*CLEMEVNLKNRNRNLQWFHN 466
           R  H  AFD + G   L  E++L+   R+++WFHN
Sbjct: 121 RKGHISAFDWRTGK--LLTELHLRETVRDVKWFHN 153


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 259 SSVGNSLRFTSSPNSERSWNRPLGNQRLCREKSLMGRQPLPLHNKNE 119
           +++  SLR T + N ++ WN    N   C  K L+ R      + NE
Sbjct: 579 NTLDKSLRRTDAKNFDQQWNLQKINTMRCDLKGLIRRLSTEWSSNNE 625


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 26  ELPGRPAFKWLP*VKKITSKTATQPEI 106
           E P  PAF W P +  ITS+  T  E+
Sbjct: 362 EDPDLPAFFWDPIINPITSRQLTLHEL 388


>SPAC17C9.13c |cut8||tethering factor for nuclear proteasome
           Cut8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 451 QVPVSILQIHLHLQALVTILVECVE 377
           Q+P+S L  +   Q L TIL++CVE
Sbjct: 32  QLPLSRLLQYSDKQQLFTILLQCVE 56


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 417 WR*I*RIETGTCNGFT 464
           WR +  ++ GTC+GFT
Sbjct: 280 WRALDELDAGTCDGFT 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,110,039
Number of Sequences: 5004
Number of extensions: 39873
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)