Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2i22
         (554 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88169-5|AAB42235.2|  367|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel...    29   3.0  
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell...    29   3.0  
U43283-3|AAC69024.2|  880|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>U88169-5|AAB42235.2|  367|Caenorhabditis elegans Hypothetical
           protein T03F1.7 protein.
          Length = 367

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/53 (24%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +3

Query: 57  YHRSKKSHPKLPLSLRYEIDISFLLCNGNGCRPIKLFSLHKRWL--PKGLFQL 209
           Y R    + ++PL+L ++++++  LC+   C      S+  +++  PK +FQ+
Sbjct: 160 YRRGVWQYGRVPLTLTFQLEVAKRLCSPIACDTRSRISIMSQYVAEPKMVFQI 212


>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans
           trithorax-related protein LIN-59 protein.
          Length = 1312

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 105 YEIDISFLLCNGNGCRPIKLFSLHKRWL 188
           Y + I FL   GN   P++  SL ++WL
Sbjct: 850 YTLIIKFLKTKGNNPNPVEFVSLFRKWL 877


>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
           lineage protein 59 protein.
          Length = 1312

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 105 YEIDISFLLCNGNGCRPIKLFSLHKRWL 188
           Y + I FL   GN   P++  SL ++WL
Sbjct: 850 YTLIIKFLKTKGNNPNPVEFVSLFRKWL 877


>U43283-3|AAC69024.2|  880|Caenorhabditis elegans Hypothetical
           protein T25G12.6 protein.
          Length = 880

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 105 YEIDISFLLCNGNGCRPIKLFSLHKRWLPKGLFQL 209
           Y  D+  LL N N  +    F+L K W+ K L  L
Sbjct: 285 YSKDVIILLDNSNAMKSFTNFNLVKSWIVKTLLPL 319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,627,081
Number of Sequences: 27780
Number of extensions: 223966
Number of successful extensions: 500
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)