Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2i22
         (554 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    24   1.2  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.7  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 200 IPATLGVR*AREPKGITNTGPSKSSASLNLTP 295
           +P +LG+  A EP  + ++     + +L+LTP
Sbjct: 159 VPISLGLHRANEPVVLDDSKEEHPTCALDLTP 190


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 156 WVDSRYRYTIKMRYQF 109
           W D R RY+ + +Y+F
Sbjct: 117 WYDPRLRYSNRSQYEF 132


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 156 WVDSRYRYTIKMRYQF 109
           W D R RY+ + +Y+F
Sbjct: 117 WYDPRLRYSNRSQYEF 132


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 156 WVDSRYRYTIKMRYQF 109
           W D R RY+ + +Y+F
Sbjct: 168 WYDPRLRYSNRSQYEF 183


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 156 WVDSRYRYTIKMRYQF 109
           W D R RY+ + +Y+F
Sbjct: 117 WYDPRLRYSNRSQYEF 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,027
Number of Sequences: 438
Number of extensions: 2698
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)