Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2i18
         (439 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1164 + 28104181-28104272,28104359-28104989                       28   3.8  
05_03_0454 - 14227447-14228040                                         28   3.8  
02_05_0031 - 25215587-25216145,25218108-25218133,25218262-252184...    28   3.8  
01_05_0490 + 22672241-22674679                                         27   5.0  
05_03_0164 - 9078814-9079908                                           27   8.7  
04_03_0989 - 21475147-21475361,21477029-21477074,21477364-21479292     27   8.7  
02_05_0691 - 30949234-30949243,30949613-30950001,30950425-309504...    27   8.7  

>06_03_1164 + 28104181-28104272,28104359-28104989
          Length = 240

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 71  NGWSRTWAPVHSASLLPVYCQR 136
           NGW R WA   S +++ V C R
Sbjct: 146 NGWRRVWAEGDSKAVVDVVCDR 167


>05_03_0454 - 14227447-14228040
          Length = 197

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 9   IFKRKSSSLIIVCEVNGNLLRMGGHGHGPP 98
           +F R    +I   E++G L R+G  G  PP
Sbjct: 48  MFDRDGDGVITPAELSGALCRLGARGEAPP 77


>02_05_0031 -
           25215587-25216145,25218108-25218133,25218262-25218486,
           25219809-25220111
          Length = 370

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 71  NGWSRTWAPVHSASLLPVYCQR 136
           NGW R WA   S +++ V C R
Sbjct: 276 NGWRRVWAEGDSKTVVDVVCDR 297


>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 93  PPYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHPG 230
           PP   P     +V+ +P+ +ELE  + V+ +K P   +    + PG
Sbjct: 466 PPPARPRRRSRSVESLPRTEELEAEIVVEEIKYPLPSSSPAMFPPG 511


>05_03_0164 - 9078814-9079908
          Length = 364

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = +3

Query: 45  CEVNGNLLRMG-GHGHGPP--YTVPHYSQ 122
           C + G L R   GHGHGPP  Y V   S+
Sbjct: 184 CHLPGLLTRSAQGHGHGPPDEYAVASLSE 212


>04_03_0989 - 21475147-21475361,21477029-21477074,21477364-21479292
          Length = 729

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +3

Query: 69  RMGGHGHGPPY 101
           RMGGHGH  PY
Sbjct: 670 RMGGHGHDEPY 680


>02_05_0691 -
           30949234-30949243,30949613-30950001,30950425-30950449,
           30950594-30950688,30950842-30951359,30951652-30951736,
           30951842-30952633
          Length = 637

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 181 DLKIHGSEMRLGDITLDLALAGREPENS 264
           + ++HG EM L +I+ DLA +     NS
Sbjct: 519 ETRVHGLEMALDEISRDLAASSGRTSNS 546


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,433,941
Number of Sequences: 37544
Number of extensions: 272571
Number of successful extensions: 752
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)