Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2i12
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3 |S...   136   4e-33
SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p...    59   6e-10
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac...    50   5e-07
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    27   3.8  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    26   5.0  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    26   6.6  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   6.6  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    26   6.6  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    25   8.7  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   8.7  
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    25   8.7  
SPBC1347.09 |||hexaprenyldihydroxybenzoate methyltransferase|Sch...    25   8.7  

>SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 116

 Score =  136 bits (328), Expect = 4e-33
 Identities = 60/85 (70%), Positives = 75/85 (88%)
 Frame = +2

Query: 440 LPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDRCKVEKRKTINGEDV 619
           LPIAN+A+IMK A+PEN KI+K+A++CVQ+C+SEFISFVT EAS++C  EKRKTI GEDV
Sbjct: 12  LPIANVARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGEDV 71

Query: 620 LFALNTLGFDNYVKPLRLYLTKYRE 694
           L ALNTLGF+NY + L++ LTKYRE
Sbjct: 72  LLALNTLGFENYAEVLKISLTKYRE 96


>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 161

 Score = 59.3 bits (137), Expect = 6e-10
 Identities = 29/83 (34%), Positives = 47/83 (56%)
 Frame = +2

Query: 410 NAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDRCKVE 589
           N    + +  LP A + K++   +P +    K+AR+ + EC  EFI  V+SEA++ C+ E
Sbjct: 2   NDGFADDELSLPKATVQKMVSDILPVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKE 61

Query: 590 KRKTINGEDVLFALNTLGFDNYV 658
            +KTI  E ++ AL  L F  Y+
Sbjct: 62  AKKTIAAEHIIKALENLEFKEYI 84


>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 49.6 bits (113), Expect = 5e-07
 Identities = 27/95 (28%), Positives = 49/95 (51%)
 Frame = +2

Query: 404 KSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDRCK 583
           KS       D  LP + I +++K  +PE   + K+A + +    + F+SF+TS + +   
Sbjct: 5   KSKETSELDDLALPRSIIMRLVKGVLPEKSLVQKEALKAMINSATLFVSFLTSASGEIAT 64

Query: 584 VEKRKTINGEDVLFALNTLGFDNYVKPLRLYLTKY 688
              RK +  +DVL AL+ + +  + K L+ +L  Y
Sbjct: 65  NNNRKILMPQDVLNALDEIEYPEFSKTLKKHLEAY 99


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 320 NGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQD 433
           NG  V D T VV S    ED+ N ++    N P+   +
Sbjct: 279 NGKQVGDLTLVVKSAVFREDKQNDENEKNENEPIEASE 316


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = -3

Query: 404 YSQSPSCFHLLTHHQN*QQMCHPLPKIHCPISL 306
           Y   P C    TH  N       +P IH P+ L
Sbjct: 127 YDPRPGCLKFTTHEINVSYTDTSIPVIHIPVQL 159


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 630 NANNTSSPLMVLRFSTLHLSLASLVTNDMNS 538
           N+N+ SSP+ V R STL  + A+    +M S
Sbjct: 529 NSNSKSSPVAVQRVSTLPQASANKQAKEMES 559


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 611 EDVL-FALNTLGFDNYVKPLRLYLTKYREIVMSPVTINK 724
           E++L F LN L FDN  +  +   T +RE ++S +++ +
Sbjct: 717 EEILDFPLNVLQFDNDNESCQFSETFFREGILSKISLRR 755


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 410  NAPLREQDRFLPIA-NIAKIMKRAIPENGKIAKDARECVQEC 532
            + P  E D    I  ++A +   +IP+N KI+  AR+ +++C
Sbjct: 1245 STPWSEMDNEWAIMYHVAAMHTPSIPQNEKISSLARDFIEQC 1286


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 169 LNTQFCKHYVTLSCKSSTHFFNKRELLLK 255
           L +   K  +T  CK +T +FN R   +K
Sbjct: 106 LKSHRIKDKITTKCKGTTKYFNSRHFEIK 134


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 615  SSPLMVLRFSTLHLSLASLVTNDMNSDIHS*THS 514
            SS L  LR + LHL  ASLV +  +   H+ T +
Sbjct: 1366 SSSLRKLRATCLHLLFASLVAHKFDQPQHAQTRT 1399


>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 305 LVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSK 406
           L    NG+ V +D F    +DV E+E + D+  K
Sbjct: 118 LAEQPNGYFVLNDIFRFLREDVEEEEESPDAVEK 151


>SPBC1347.09 |||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 353 VNSDDVLEDENNSDSGSKSNAPLREQDRFL 442
           V S  +L+ E+NS++  + + P  +QDR L
Sbjct: 31  VISSKILQFEDNSETSLRHDLPKYDQDRLL 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,984,485
Number of Sequences: 5004
Number of extensions: 62400
Number of successful extensions: 191
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)