Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2i11
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc... 31 0.25
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar... 28 1.8
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po... 27 4.1
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi... 26 5.5
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 26 5.5
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 26 7.2
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1... 26 7.2
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 26 7.2
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.5
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 25 9.5
>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 479
Score = 30.7 bits (66), Expect = 0.25
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -1
Query: 305 MSISC-LRLL-TRRNVNSFVESISRTTFLAFSVSCPISPAYNTEVA 174
+SISC +RLL T+ + VE I T A +V C +P NTE A
Sbjct: 154 ISISCKIRLLETKEDTLKLVERICDTGVRAITVHCRTTPMRNTEPA 199
>SPAC23H3.03c |||nitrogen permease regulator
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +1
Query: 640 IGDHHKCNISIFNIIKKFHRKEITLFYNSIVCK--RNNLCLERLLNY 774
IG +++ N IFN+ FH +E + Y +V + RN LE+ ++Y
Sbjct: 92 IGSNYERNALIFNMCMIFHEEEDSACYIPLVKRLARNLEVLEKQIHY 138
>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -1
Query: 287 RLLTRRNVNSFVESISRTTFLAFSVSCPISPAYNTEVALSNELLI 153
RL+T ++ F+ ++ +TF F ++CP Y AL N+ +I
Sbjct: 47 RLITVEKIDVFINAMVPSTFALFCMACPYL-LYTAVDALLNKDVI 90
>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 26.2 bits (55), Expect = 5.5
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = -1
Query: 173 LSNELLIGIPSWFTMTTPITPLWAWILLIVSSTSVA----IMYEPQN*NFLPLTTHKRIT 6
++ E + +P W T + P L+ V +T +A + +PQ+ NFL +T H+ +
Sbjct: 98 IAEEGRVYLPYWMMTTLSLEP---GDLVRVINTDIAQGSYVKLQPQSVNFLDITDHRAVL 154
Query: 5 D 3
+
Sbjct: 155 E 155
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1283
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 143 SWFTMTTPITPLWAWILLIVSSTSVAIMYEP 51
SWFT T P T + +++VS T+ A P
Sbjct: 1097 SWFTTTVPATGTRSGSVIVVSPTAPACSSTP 1127
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 25.8 bits (54), Expect = 7.2
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = -1
Query: 335 TINMNSLSGAMSISCL----RLLTRRNVNSFVESISRTTFLAFSVSCPISPAYNTE 180
T+ +N S MS+ + R L RR ++ + +S+TT ++ V CP+ PA E
Sbjct: 569 TLYLNCNSKPMSLGSMFEHYRKLARRLISHY---LSKTTLISLLVGCPV-PAIPAE 620
>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
Phf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 414 FSEHYLLYTGTILEPPMVIFLALRNKFSVV--DFFHW 518
++ Y+ +GT+ + P +I LA+RN S + F+W
Sbjct: 344 YTASYVANSGTLYDYPTLIRLAIRNTLSPSKDEIFNW 380
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/59 (23%), Positives = 31/59 (52%)
Frame = +3
Query: 336 YTEHIGLNLYLQKTVG*FIIKIILYCFSEHYLLYTGTILEPPMVIFLALRNKFSVVDFF 512
Y+ + G ++YL + ++ + ++ HY+ + T+ + F+ ++FS VDFF
Sbjct: 1412 YSLYTGSSIYLGSRLIMMLLFGTMTVWTTHYVYFWVTMFALVICPFIYNPHQFSFVDFF 1470
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +2
Query: 500 GRFFSLVAVIGHKFFNGN*FITVYLEDQ*LMIKLMALNAFQTNVILVL 643
G F +L A+I F + F++ +LED+ +M+ + L + LVL
Sbjct: 351 GNFIALSALIVAPFILASSFLSRWLEDRHIMLGGLFLGILAVAIHLVL 398
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 390 IIKIILYCFSEHYLLYTGTILEPPMVIFLALRNK 491
+I +L SE+Y+LY I P +VI +R+K
Sbjct: 554 LIDQLLELLSEYYVLYATDISFPELVIPAIVRSK 587
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,194,322
Number of Sequences: 5004
Number of extensions: 68665
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -