Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2i10
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...   101   1e-22
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    87   2e-18
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    73   3e-14
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    28   1.5  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    28   1.5  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    26   4.7  
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe...    26   6.2  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score =  101 bits (241), Expect = 1e-22
 Identities = 46/93 (49%), Positives = 62/93 (66%)
 Frame = +1

Query: 385 RKGDLLHMHYTGTLDDGTEFDSSIPRGNPLTFKLGSGQVIKGWDQGLLGMCEGEQRKLVI 564
           + GD + MHYTGTL +G +FDSS+ RG+P    +G GQ+I+GWD+G+  M  GE+ KL I
Sbjct: 18  KPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGWDEGVPKMSLGEKAKLTI 77

Query: 565 PPELAYGSAGAPPKIPKSATLTFHVELVKIERK 663
            P+  YG  G P  IP ++TL F VEL+ I  K
Sbjct: 78  TPDYGYGPRGFPGLIPPNSTLLFDVELLAINDK 110


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 87.0 bits (206), Expect = 2e-18
 Identities = 41/88 (46%), Positives = 58/88 (65%)
 Frame = +1

Query: 391 GDLLHMHYTGTLDDGTEFDSSIPRGNPLTFKLGSGQVIKGWDQGLLGMCEGEQRKLVIPP 570
           G  + M Y G L++G  FD +  +G P  F LG G+VI+GWD G+ GM EG +RK+ IP 
Sbjct: 275 GKKVEMRYIGKLENGKVFDKNT-KGKPFAFILGRGEVIRGWDVGVAGMQEGGERKITIPA 333

Query: 571 ELAYGSAGAPPKIPKSATLTFHVELVKI 654
            +AYG+    P IPK++TL F V+LV++
Sbjct: 334 PMAYGNQSI-PGIPKNSTLVFEVKLVRV 360


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 73.3 bits (172), Expect = 3e-14
 Identities = 38/83 (45%), Positives = 51/83 (61%)
 Frame = +1

Query: 406 MHYTGTLDDGTEFDSSIPRGNPLTFKLGSGQVIKGWDQGLLGMCEGEQRKLVIPPELAYG 585
           M Y G L +G  FD +I  G P TF LG  +VIKGWD G++GM  G +R + IP  +AYG
Sbjct: 281 MRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVIKGWDVGIVGMQVGGERTIHIPAAMAYG 339

Query: 586 SAGAPPKIPKSATLTFHVELVKI 654
           S    P IP ++ L F V+L+ +
Sbjct: 340 SKRL-PGIPANSDLVFDVKLLAV 361


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 571 ELAYGSAGAPPKIPKSATLTFHVELVKIERKD 666
           EL Y  AG PP +PK A    H++    E  D
Sbjct: 86  ELDYNKAGDPPILPKQAKDDHHIKRSSSETAD 117


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 217 NTDFLT*LHSLFNCYKTLLNTKMRFKSTLNVP 122
           +TD +  L  + NCY  + N K + +ST N P
Sbjct: 582 DTDSIDVLEDIDNCYSKVFNKKSKRESTSNEP 613


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 615 LWYLWWCSS*TISQFRWNDKFTLFSF 538
           ++YLW CS    SQF   + FT+  F
Sbjct: 30  MYYLWACSKFNDSQFIKPESFTIAGF 55


>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 440 NLIVQF-LEVTP*PSNLVLVKLLRVGIKGYLECAKENNVNLS 562
           NL+ Q+ +E+    S LVL K LR+ ++  LE  K   ++ S
Sbjct: 21  NLLEQYEVEIARLKSQLVLEKKLRIQVEKELESVKTKQISSS 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,560,248
Number of Sequences: 5004
Number of extensions: 46986
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)