Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2i09
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    29   0.34 
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    27   2.4  
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    25   5.5  
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    25   5.5  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    25   5.5  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    25   7.3  
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    25   7.3  
SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.6  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    25   9.6  
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    25   9.6  
SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     25   9.6  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    25   9.6  

>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +1

Query: 286 PTLKVIVPQNATVRDLKKATARHFELQQKRTGLKVKISWKYIWKTYHLAYDSLILDNDDQ 465
           PTL  +V +   V D    T  H     KR G  ++ +W+   K +      +IL+N  +
Sbjct: 215 PTLGFVVDRWQRVEDFVPETYWHLRFVDKRQGKTIQFNWERA-KVFDRLTTMIILENCLE 273

Query: 466 C 468
           C
Sbjct: 274 C 274


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = +1

Query: 130 LIESTQLTLGTLLRTDPLLSDLPQDIILEEIVSQIAVENGQSITIFI 270
           +I  T   L T L++ PL S  P D+ILE++ S ++ ++  S+T  I
Sbjct: 292 VIMPTLTCLLTHLKSHPLQSANPADVILEQLES-LSSKSSLSVTFKI 337


>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 19/90 (21%), Positives = 37/90 (41%)
 Frame = +1

Query: 157 GTLLRTDPLLSDLPQDIILEEIVSQIAVENGQSITIFISRDPEPTLKVIVPQNATVRDLK 336
           G +L+   +    P   +     S+ AVE G S TI    DP   + + + Q   ++   
Sbjct: 128 GRILQISSVAGYYPSPCLSMYNASKFAVE-GLSQTIMRELDPNWNIAITIVQPGGMQT-- 184

Query: 337 KATARHFELQQKRTGLKVKISWKYIWKTYH 426
           +  + + +  +     +   SW+  W+ YH
Sbjct: 185 EWASSNMQWAKPHPAYENDRSWRPFWENYH 214


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 106 LSNLSHDDLIESTQLTLGTLL 168
           L++ SHDD I   QLT  T+L
Sbjct: 98  LASFSHDDWISGIQLTSDTIL 118


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
 Frame = +1

Query: 175 DPLLSDLPQDIILEEIVSQIAVENGQSITIFIS--RDPEPTLKVIVP--QN--ATVRDLK 336
           D LLSDLP++I      S IA  +  ++   IS  + P  T     P  +N  + + DL 
Sbjct: 60  DSLLSDLPEEIDSTNAQSNIATPSPGTVAAAISGIQPPPKTPSSDSPSLENSLSNLNDLF 119

Query: 337 KATARH 354
           K+  RH
Sbjct: 120 KSRGRH 125


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 193 LPQDIILEEIVSQIAVENGQSITIFISRDPEP 288
           +  ++ILEE V+ + +EN Q    F  + P+P
Sbjct: 290 MESNMILEEKVAHLQLENEQLRLFFKEKAPQP 321


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
 Frame = +1

Query: 157 GTLLRTDPLLSDLPQDIILEEIVSQIAVENGQSITIFISR---DP-EPTLKVIVPQNATV 324
           GT+L +D  L++L         V   A+E  QS ++ I++   D     L  I   NA  
Sbjct: 365 GTVLFSDKALANLAHPFFTPSPVQAAAIEQLQSYSVLINQAIGDAISDLLATISVLNALH 424

Query: 325 RDLKKATARHFELQQKRTGLKVKISWKYIWKT 420
            D    +  + +L  K    KVK+S + I+K+
Sbjct: 425 WDASAWSNTYKDLPNKLA--KVKVSDRTIYKS 454


>SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 424 HLAYDSLILDNDDQCIEDYGVCNKVV 501
           H  +D+ +L N+D  ++ + VCN+ V
Sbjct: 92  HNHHDNSVLRNEDTQLQPHIVCNRTV 117


>SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1163

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 415  KTYHLAYDSLILDNDDQCIEDY 480
            KT+  AY++ + D DD+  E++
Sbjct: 986  KTFASAYEAAVYDTDDEAEEEF 1007


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 374 LFCWSSKCLAVAFFRSRTVAFCGTITLRVGSGSLDIN 264
           +FC ++  L + +FR + +  C TI   V S   DI+
Sbjct: 181 IFCIAN-LLCLLYFRLKQIRLCQTIQANVISSGADIS 216


>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +1

Query: 106 LSNLSHDDLIESTQLTLGTLLRTDPLLSDLPQDIILEEIVSQIAVENG 249
           +SN  H +      +  GT +  DP L  LP  +  E  V  I   NG
Sbjct: 1   MSNFQHGNYHSYYSMRGGTSI-IDPRLKCLPDSLFYEASVLDIGCNNG 47


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 358 ELQQKRTGLKVKISWKYIWKTYHL 429
           E  +K+ GLK K   K +W  Y+L
Sbjct: 235 EFYEKKLGLKQKALTKCLWGDYYL 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,970,665
Number of Sequences: 5004
Number of extensions: 38158
Number of successful extensions: 107
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)