Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2i09
         (545 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1480 + 33890530-33890797,33890903-33891008,33891534-338915...    35   0.037
08_02_0499 - 17820615-17822516,17823224-17823373,17823491-178235...    31   0.60 
02_01_0659 - 4908799-4908812,4909174-4909361,4909481-4909542,491...    30   1.0  
11_06_0229 + 21512943-21513237,21513273-21513756,21514668-21516657     29   3.2  
04_04_1290 + 32399905-32399972,32400502-32400571,32400950-324017...    28   5.6  
11_01_0782 + 6543906-6544702,6545717-6547850                           27   7.4  
09_04_0692 + 19502878-19502920,19505011-19505104,19505196-195052...    27   7.4  

>04_04_1480 +
           33890530-33890797,33890903-33891008,33891534-33891586,
           33892099-33892139
          Length = 155

 Score = 35.1 bits (77), Expect = 0.037
 Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
 Frame = +1

Query: 145 QLTLGTLLRTDPLLSDLPQDIILEEIVSQIAVENGQSITIFISRDPEPTL--KVIVPQNA 318
           Q  L  LL  DP+L+D+P+   L ++ + I +E G ++ + + +    +    V +   A
Sbjct: 39  QSMLAALL-DDPILADVPRKPSLADVDTLINLELGSAMRLTVVKLDGTSFGTDVAMLNTA 97

Query: 319 TVRDLKKATARHF-ELQQKRTGLKVKISW 402
           TV+DLK A  +   E++Q++ G +  ISW
Sbjct: 98  TVKDLKMAIRKKTDEIEQEKMGHR-HISW 125


>08_02_0499 -
           17820615-17822516,17823224-17823373,17823491-17823568,
           17823948-17824061,17824145-17824297,17826928-17827071,
           17827162-17827516,17828574-17828741,17829522-17829751,
           17829916-17830049,17830686-17830749
          Length = 1163

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
 Frame = +1

Query: 196 PQDI-ILEEIVSQIAVENGQSITIFISRDPEPTLKVI----VPQNATVRDLKKATARHFE 360
           P +I IL+ ++S  AV  G  I+  +SR+    + ++    V     VRDL+KA ARH +
Sbjct: 492 PTEIPILDSVISN-AVVPGSDISTVLSREDREDISLLFLEFVDLYGDVRDLRKAWARHSK 550

Query: 361 L 363
           L
Sbjct: 551 L 551


>02_01_0659 -
           4908799-4908812,4909174-4909361,4909481-4909542,
           4910171-4910270,4910494-4910596,4910698-4910878
          Length = 215

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +1

Query: 298 VIVPQNATVRDLKKATARHFELQQKRTGLKVKISWKYIWKTYHLAYDSLILDNDDQCIED 477
           V + ++A V +LK A    F      T  K  ISW+++W  + L +    L +D   +  
Sbjct: 62  VQIARSAAVWELKAAIEDVFAALYDETDNKA-ISWQHVWSHFCLCFKDEKLTDDKATLRA 120

Query: 478 YGV 486
           +G+
Sbjct: 121 FGI 123


>11_06_0229 + 21512943-21513237,21513273-21513756,21514668-21516657
          Length = 922

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 20/81 (24%), Positives = 36/81 (44%)
 Frame = +1

Query: 181 LLSDLPQDIILEEIVSQIAVENGQSITIFISRDPEPTLKVIVPQNATVRDLKKATARHFE 360
           LL  +  D      V    + + + + I+I  + E TL  +V    ++R ++    R   
Sbjct: 667 LLGKISDDTCPNFAVELCTLTDLRVLNIWIKMEDEGTLNTLVESLQSLRRIQNLNIR--- 723

Query: 361 LQQKRTGLKVKISWKYIWKTY 423
           L  K TG++ K S   IW+ +
Sbjct: 724 LDIKDTGMETKYSMMCIWEDW 744


>04_04_1290 +
           32399905-32399972,32400502-32400571,32400950-32401734,
           32403068-32403674
          Length = 509

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 181 LLSDLPQDIILEEIVSQIAVENGQSIT 261
           +LSD+ Q  +LEEIV+ + VE G + T
Sbjct: 281 VLSDVEQRALLEEIVALLPVERGVATT 307


>11_01_0782 + 6543906-6544702,6545717-6547850
          Length = 976

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/63 (22%), Positives = 33/63 (52%)
 Frame = +1

Query: 91  MDIDNLSNLSHDDLIESTQLTLGTLLRTDPLLSDLPQDIILEEIVSQIAVENGQSITIFI 270
           +D++  ++L  D LI+   L L   L     ++ LP++I   +++  + +   + +TI +
Sbjct: 566 LDLEECTDLDDDHLIQVCNLFLLRYLSLGGKVTKLPEEITKLKLLETLDLRRRKEVTINL 625

Query: 271 SRD 279
           S +
Sbjct: 626 STE 628


>09_04_0692 +
           19502878-19502920,19505011-19505104,19505196-19505227,
           19505833-19506074,19506758-19506994,19508283-19508396
          Length = 253

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +1

Query: 196 PQDIILEEIVSQIAVENGQSITIFISRDPEPTLKVIVPQNA-TVRDLKKATARHFELQ 366
           PQD  ++  V +I   N QS  I    DP  TL + +P  A  V++LKK     FE+Q
Sbjct: 65  PQDEDIQSNVLEIIGTNVQSTYITCPADPAATLGIKLPFLALIVKNLKKYFT--FEIQ 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,839,722
Number of Sequences: 37544
Number of extensions: 211487
Number of successful extensions: 531
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)