Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2i09
         (545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40061-6|AAA81152.2|  426|Caenorhabditis elegans Hypothetical pr...    31   0.54 
AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical ...    31   0.54 
Z81557-6|CAB04529.1|  357|Caenorhabditis elegans Hypothetical pr...    28   3.8  
U41548-4|AAA83203.1|  322|Caenorhabditis elegans Hypothetical pr...    28   3.8  
AC024835-3|AAK68538.2|  405|Caenorhabditis elegans Hypothetical ...    28   5.0  
U28733-1|AAA68302.2|  982|Caenorhabditis elegans Patched related...    27   8.8  

>U40061-6|AAA81152.2|  426|Caenorhabditis elegans Hypothetical
           protein ZK563.6 protein.
          Length = 426

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
 Frame = +1

Query: 76  LTSYKMDIDNLSNLS-HDDLIESTQLTLGTLLRTDPLLSDLPQDIILEEIVSQIAVENGQ 252
           +++ K DI  L   S HD LI     TLG  +R + L  D+P + +   I+  + V+N  
Sbjct: 259 VSNIKCDIHKLQVFSSHDLLILPILETLG--IREEVLGKDMPPEFMSTIIIETMIVDNSP 316

Query: 253 SITIFISRDP-EPTLK 297
            + +   ++P E TL+
Sbjct: 317 VVKVLFRKNPREITLR 332


>AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical
           protein Y66H1B.3 protein.
          Length = 1084

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 29/109 (26%), Positives = 56/109 (51%), Gaps = 8/109 (7%)
 Frame = +1

Query: 97  IDNLSNLSHDDLIESTQLTLGT---LLRTDPLLSDLPQDIILEEIVSQIAVENGQSITIF 267
           +++  N S +D +E+T+  + +   LL+  PL++  P ++I  EI       +  S+  +
Sbjct: 194 LEDWENWSPNDALENTEKAMKSAQDLLKVAPLIA--PAEMIHPEI-------DEMSVMTY 244

Query: 268 ISRDPEPTLKVIVPQ-NATVRDLKKATA----RHFELQQKRTGLKVKIS 399
           +S+ P     ++ P+  AT+ +L K       R F+L+  R G K K+S
Sbjct: 245 LSQFPATKPIIMKPKVQATISNLDKILQVNDPREFDLKLSRDGFKPKVS 293


>Z81557-6|CAB04529.1|  357|Caenorhabditis elegans Hypothetical
           protein F59A1.12 protein.
          Length = 357

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/75 (20%), Positives = 35/75 (46%)
 Frame = +1

Query: 226 SQIAVENGQSITIFISRDPEPTLKVIVPQNATVRDLKKATARHFELQQKRTGLKVKISWK 405
           ++  + +G+ + IF      P +  ++       +LKK  A++    +K   L+ K+SW 
Sbjct: 251 AESVISSGKVMDIFFKHSRVPIITTVI--TICFEELKKEFAKNSSYSEKTKKLQQKLSWS 308

Query: 406 YIWKTYHLAYDSLIL 450
            + +   L+   +I+
Sbjct: 309 IMSQVVMLSVIVIII 323


>U41548-4|AAA83203.1|  322|Caenorhabditis elegans Hypothetical
           protein M02F4.7 protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 417 FPNVFPRYLHFEPCSLLLE-FKMSCRCFFQITN 322
           FP+   +YL+F PC    E +  +C CF  I+N
Sbjct: 167 FPSCVQKYLNFVPCQSGWEYYPPTCACFKIISN 199


>AC024835-3|AAK68538.2|  405|Caenorhabditis elegans Hypothetical
           protein Y57E12B.4 protein.
          Length = 405

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 121 HDDLIESTQLTLGTLLRTDPLLSDLPQDIILEEIVSQIAVENGQSITIFISRDP 282
           H   IE+T+ T G    TDP++SD  +        S +A     S  I+I++ P
Sbjct: 254 HSTTIENTEPTTGRDRTTDPVISDKTETPSTN--FSTVAENTASSTPIYITKVP 305


>U28733-1|AAA68302.2|  982|Caenorhabditis elegans Patched related
           family protein 6 protein.
          Length = 982

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +1

Query: 163 LLRTDPLLSDLPQDIILEEIVSQI--AVENGQSITIFISRD 279
           LL +DPL+  L ++I L     QI  A++N  +ITI  SRD
Sbjct: 615 LLHSDPLVEALKREIELFHGGDQIEIAIQNCPNITIAESRD 655


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,661,441
Number of Sequences: 27780
Number of extensions: 203893
Number of successful extensions: 536
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)