Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2i04
(780 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 285 6e-78
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 151 1e-37
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 146 3e-36
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 145 5e-36
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 130 2e-31
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 119 4e-28
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 114 1e-26
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 114 1e-26
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 109 3e-25
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 106 3e-24
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 90 4e-19
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 85 1e-17
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 76 5e-15
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 51 2e-07
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta... 28 1.7
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 27 2.3
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 4.0
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 26 5.3
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 26 5.3
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 9.2
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S... 25 9.2
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 285 bits (698), Expect = 6e-78
Identities = 127/147 (86%), Positives = 134/147 (91%)
Frame = +2
Query: 296 MALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 475
MALKRINREL DLG+DPP+ CSAGP G+DLFHWQATIMGP DSPY GGVFFL+IHFPTDY
Sbjct: 1 MALKRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDY 60
Query: 476 PFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLV 655
PFKPPKV FTTRIYHPNINSNGSICLDILR QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 61 PFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLV 120
Query: 656 PEIARIYKTDREKYXELAREWTRKYAM 736
PEIA +YKTDR +Y AREWTRKYA+
Sbjct: 121 PEIAHVYKTDRSRYELSAREWTRKYAI 147
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 151 bits (365), Expect = 1e-37
Identities = 72/148 (48%), Positives = 98/148 (66%), Gaps = 1/148 (0%)
Frame = +2
Query: 296 MAL-KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTD 472
MAL KRI +E++ L RDPP A P ++L +++ T+ GP S Y+GG F L + P +
Sbjct: 1 MALPKRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDE 60
Query: 473 YPFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPL 652
YP PP V F T+IYHPN++ G ICL L+ WSPAL I VLLSI +L+ PNPDDPL
Sbjct: 61 YPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPL 120
Query: 653 VPEIARIYKTDREKYXELAREWTRKYAM 736
++A+I+K + + AREWT+KYA+
Sbjct: 121 DNDVAKIWKENEPQAIANAREWTKKYAV 148
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 146 bits (354), Expect = 3e-36
Identities = 65/149 (43%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Frame = +2
Query: 290 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 469
S + +R+ +E DL P ++LFHW T +GP DS Y GG F ++ FP
Sbjct: 5 SPSSSRRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPL 64
Query: 470 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQ-WSPALTISKVLLSICSLLCDPNPDD 646
DYPF+PP + FTTRIYHPN +S G++CL IL+ Q + P++ + VL I LL +PNPDD
Sbjct: 65 DYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDD 124
Query: 647 PLVPEIARIYKTDREKYXELAREWTRKYA 733
PLV IA Y+ DR + ++AR++ ++A
Sbjct: 125 PLVASIAEQYRNDRPSFDKIARDYVEQFA 153
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 145 bits (352), Expect = 5e-36
Identities = 63/144 (43%), Positives = 92/144 (63%), Gaps = 1/144 (0%)
Frame = +2
Query: 305 KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFK 484
+RI +EL D+ +D A +D+ H + GP +PY+GG F + I P DYPF+
Sbjct: 7 RRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFR 66
Query: 485 PPKVAFTTRIYHPNINS-NGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLVPE 661
PPK+ F T+IYHPN++S G+ICLDIL+ QWSP T+ L+S+ SLLC P P +P +
Sbjct: 67 PPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQ 126
Query: 662 IARIYKTDREKYXELAREWTRKYA 733
+A++Y + +++ AREWT YA
Sbjct: 127 VAQVYLQNYQQFVRTAREWTSSYA 150
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 130 bits (315), Expect = 2e-31
Identities = 56/142 (39%), Positives = 90/142 (63%)
Frame = +2
Query: 290 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 469
S A +R+ R+ + + +DPPA SA P +++ W A I+GP D+P++ G F L + F
Sbjct: 2 STTARRRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDE 61
Query: 470 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDP 649
YP KPP V F + ++HPN+ +NG +CLDIL+ +WSP ++ +L SI SLL DPN P
Sbjct: 62 QYPNKPPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNASP 121
Query: 650 LVPEIARIYKTDREKYXELARE 715
E A++++ ++++Y R+
Sbjct: 122 ANAEAAQLHRENKKEYVRRVRK 143
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 119 bits (287), Expect = 4e-28
Identities = 55/158 (34%), Positives = 91/158 (57%), Gaps = 14/158 (8%)
Frame = +2
Query: 296 MALKRINRELQDLGRDPPAQCSAGPHGED-LFHWQATIMGPVDSPYQGGVFFLTIHFPTD 472
MAL+R+ +E ++L + P +AGP ED F W I GP +P++GG++ T+ FP+D
Sbjct: 5 MALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSD 64
Query: 473 YPFKPPKVAFTTRIYHPNINSNGSICLDILRA-------------QWSPALTISKVLLSI 613
YP PP + F +HPN+ +G++C+ IL A +WSP ++ K+LLS+
Sbjct: 65 YPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSV 124
Query: 614 CSLLCDPNPDDPLVPEIARIYKTDREKYXELAREWTRK 727
S+L +PN + + ++++ DRE+Y + R RK
Sbjct: 125 MSMLAEPNDESGANIDACKMWREDREEYCRVVRRLARK 162
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 114 bits (275), Expect = 1e-26
Identities = 53/135 (39%), Positives = 81/135 (60%), Gaps = 1/135 (0%)
Frame = +2
Query: 305 KRINRELQDLGRDPPAQCSAGPHGE-DLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPF 481
KR+ EL L SA P + +L HW TI GP D+ Y+G F +++ FP +YP+
Sbjct: 31 KRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPY 90
Query: 482 KPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLVPE 661
PP + FT+ ++HPN++ +G+ICLDIL+ +WS + +LLS+ SLL +PN PL +
Sbjct: 91 SPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQ 150
Query: 662 IARIYKTDREKYXEL 706
A ++ D +Y L
Sbjct: 151 AAELWSKDPIEYKRL 165
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 114 bits (275), Expect = 1e-26
Identities = 53/120 (44%), Positives = 75/120 (62%), Gaps = 2/120 (1%)
Frame = +2
Query: 380 DLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLD 556
D+FHW+A I GP ++PY+GG + L IH YP PP V F T+I HPNI+ +NG +C+D
Sbjct: 33 DMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMD 92
Query: 557 ILRAQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKT-DREKYXELAREWTRKYA 733
IL+ WSPA ++ L+I SLL + + PL + A++ +T D+ Y L R T YA
Sbjct: 93 ILKTHWSPAWSLQSACLAIISLLSNYDASSPLNVDAAKLLRTGDKTAYNSLVRCTTYLYA 152
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 109 bits (263), Expect = 3e-25
Identities = 55/155 (35%), Positives = 85/155 (54%), Gaps = 7/155 (4%)
Frame = +2
Query: 290 SQMALKRINRELQDLGRDPP-----AQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLT 454
S + R+ E + RD P C + G DL +W+ I G + ++GG++ LT
Sbjct: 2 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLT 61
Query: 455 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQ--WSPALTISKVLLSICSLLC 628
+ FP +YP +PPK FT ++HPN+ +G++CL IL + W PA+TI ++LL I LL
Sbjct: 62 MAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLD 121
Query: 629 DPNPDDPLVPEIARIYKTDREKYXELAREWTRKYA 733
DPN P E ++K D+ +Y + R R+ A
Sbjct: 122 DPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENA 156
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 106 bits (255), Expect = 3e-24
Identities = 48/153 (31%), Positives = 86/153 (56%), Gaps = 14/153 (9%)
Frame = +2
Query: 311 INRELQDLGRDPPAQCSAG-PHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKP 487
+ ++L+++ ++PP S G + +F W+ I+GP D+ Y+GG F T+ FP DYP P
Sbjct: 10 LRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMP 69
Query: 488 PKVAFTTRIYHPNINSNGSICLDILR-------------AQWSPALTISKVLLSICSLLC 628
PK+ FTT I+HPN++ NG +C+ IL +W P + +L+S+ S+L
Sbjct: 70 PKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLS 129
Query: 629 DPNPDDPLVPEIARIYKTDREKYXELAREWTRK 727
PN + P + A+ ++ + +++ + R R+
Sbjct: 130 SPNDESPANIDAAKEFRENPQEFKKRVRRLVRR 162
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 89.8 bits (213), Expect = 4e-19
Identities = 39/110 (35%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Frame = +2
Query: 410 GPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRAQWSPAL 586
GP ++PY GG++ + + P++YP+K P + F RI+HPNI+ +GS+CLD++ WSP
Sbjct: 38 GPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMF 97
Query: 587 TISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDREKYXELAREWTRKYA 733
+ + + + LL PN DPL E A + + Y R++ +YA
Sbjct: 98 DMINIFEVFLPQLLRYPNASDPLNGEAAALLLREPNTYYAKVRDYIARYA 147
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 85.0 bits (201), Expect = 1e-17
Identities = 38/100 (38%), Positives = 55/100 (55%)
Frame = +2
Query: 413 PVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTI 592
P + Y+GG F I +YP PPKV +IYHPNI+ G++CL+ILR W+P L +
Sbjct: 60 PDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNL 119
Query: 593 SKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYXELAR 712
+ +L+ + L PN +DPL E A D + + R
Sbjct: 120 NSILVGLQFLFLSPNAEDPLNKEAAADLHKDPQGFASRVR 159
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 76.2 bits (179), Expect = 5e-15
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Frame = +2
Query: 290 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 469
S+ A KR+ +E L ++P A P E++ W I GP D+PY+GG + T+ FP
Sbjct: 3 SKGAYKRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPP 62
Query: 470 DYPFKPPKVAFTTRIYHPNINSNGSICL---DILRAQWSPALTISKVLLSICSLL 625
DYPFKPP + T +N +CL D W+P+ +S +L+ + S +
Sbjct: 63 DYPFKPPAIRMITP--SGRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFM 115
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 51.2 bits (117), Expect = 2e-07
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Frame = +2
Query: 350 AQCSAGPHGED---LFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH 520
+ CS G D L W ATI+GP S ++ ++ L IH +YP PP V F +RI
Sbjct: 24 SSCSYGLTNADDITLSDWNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVSRINL 83
Query: 521 PNIN-SNGSI---CLDILRAQWSPALTISKVLLSI 613
P ++ G + +D LR W ++ VLL +
Sbjct: 84 PGVDGETGKVNPHKIDCLR-HWKREYSMETVLLDL 117
>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
Taf4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 27.9 bits (59), Expect = 1.7
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +2
Query: 287 NSQMALKRINRELQDLGRDPPAQCSAG---PHGEDLFHWQATIMGPVDSPYQGGVF 445
+S A K I+ + Q+ + A AG P G + W AT M P+ +P GG F
Sbjct: 246 SSSAAAKNISEDAQNRMTNATASIMAGSALPSGGKKYSWMATDMTPM-TPAVGGGF 300
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +2
Query: 578 PALTISKVLLSICSLLCDPNPDD---PLVPEIARIYKTD 685
PA++I LL++ + NP D P+V +I RI+K+D
Sbjct: 344 PAVSIDGTLLNVGDWVLIRNPADSSKPIVSQIYRIWKSD 382
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +3
Query: 351 HNVRQAHTVKIC---SIGKPQLWAQLTVLIKEEFSSLPYISLQTTLSNHQ 491
H V +T C ++ P LWA L + F Y L+T N+Q
Sbjct: 406 HTVFSGYTTVWCPQNAVFVPGLWANLATRYRASFMLTDYAGLKTIAYNYQ 455
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 26.2 bits (55), Expect = 5.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 467 TDYPFKPPKVAFTTRIYHPNINSN 538
TD FKP + T +++P+I +N
Sbjct: 113 TDKKFKPNDTSITANVFNPSIQNN 136
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 26.2 bits (55), Expect = 5.3
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 572 WSPALTISKVLLSICSLLCDPNPDDPLVPEI 664
+SPA I KVL + L DPN + P++P+I
Sbjct: 291 FSPAPFIQKVLSRL--LPSDPNVEMPMIPQI 319
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 9.2
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +1
Query: 175 DFGGTFAFRQGAILQSLIKGPWL 243
D G+ +FR+G ++++L G W+
Sbjct: 943 DDNGSLSFREGVLVEALRNGYWI 965
>SPBC1773.03c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = +2
Query: 365 GPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIY 517
G HG LF M P PY+G T H + ++ + TT Y
Sbjct: 146 GYHGNTLFALSVGGMKPRKQPYEGVFSHTTSHVSPCFEYRYKENGETTEEY 196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,446,068
Number of Sequences: 5004
Number of extensions: 75821
Number of successful extensions: 212
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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