Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2h24
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    29   0.68 
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    28   1.6  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.1  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.1  
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    26   4.8  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    26   4.8  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   4.8  
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    26   6.3  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    26   6.3  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   8.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   8.4  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   8.4  

>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +1

Query: 316 DTVVTGLRGSKINSYKINLDKGKATIDFTANVTLKAHYVMDGQVLILPIRG 468
           DT+V  L G+    Y I+L +G+ T++  +N+        DG + I+ +RG
Sbjct: 573 DTLV--LEGTLHAQYYIDLKRGRVTLNQMSNIGFVCIGYQDGGITIIDMRG 621


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 75  DSVVFDGCRRRDRGFSGEFTFLHQSVLSVRSKPQ 176
           DSV++ GC+ R +      T+LH++  S+    Q
Sbjct: 175 DSVIYYGCKYRSKNRFPTLTYLHKNSFSITRASQ 208


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = -2

Query: 335 RPVTTVSVNVIFSAGLLTSTVPSWTGSRGAIPSSAMPSANFGAT-TSITFCMHSLRFGSD 159
           +P  + + +  FS+   TST  S+  S   + SS+ PS++  +T TS +    S+   S 
Sbjct: 186 QPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSS 245

Query: 158 AEHGLMKEGKFPAETSVAATTA 93
           +           + +S A++++
Sbjct: 246 SSSSTSSSLSSSSSSSTASSSS 267


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 129 FTFLHQSVLSVRSKPQRMHTKSDRSGGS 212
           FT+ H  VL  R  P + HTK   S G+
Sbjct: 339 FTYKHPPVLITRRTPTKTHTKQLSSSGN 366


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +1

Query: 145 SPCSASDPNLNECIQKVIEVVAPKFA-DGIAEL--GIAPL 255
           +PCS  + N N+C+   + ++A +   D I +L  G+A L
Sbjct: 136 NPCSPDEKNQNDCVDLKVHLIAKEDGRDAIIDLTRGLADL 175


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -2

Query: 326 TTVSVNVIFSAGLLTSTVPSWTGSRGAIPSSAMPSANFGATTSIT 192
           +T S + + S+  LTS+ PS   S  +IPS +   ++  +T+S T
Sbjct: 123 STTSSSSLVSSTTLTSSSPSAVSSTTSIPSISSTISSSVSTSSFT 167


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 332 PVTTVSVNVIFSAGLLTSTVPSWTGSRGAIPSSA 231
           P ++ S +   S+  +TST P+ + S GAI S+A
Sbjct: 212 PSSSKSSSKFSSSSFITSTTPASSSSSGAIVSNA 245


>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = -2

Query: 284 TSTVPSWTGSRGAIPSSAMPSANFGATTSITFCMHSLRFGSD--AEHGLMKE---GKFPA 120
           T+ +P WT + GA+ ++   +A       ++  + +L  GS   AE G+++    G++ A
Sbjct: 387 TAILPKWTLALGAVTTTLAQAALVKQAAGVSVFVGNLGTGSQTWAELGILESQVTGQYLA 446

Query: 119 ETSVAAT 99
           + S  +T
Sbjct: 447 QISCTST 453


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 562 KDHYKMDRAQFKFNNLFGGNKELAQTTEKIHQSKLGDYNARNSTTGAQPDHKQ 720
           KD  K ++ + +     GG+     +TEK+ Q    D  A+ ST+  QP  ++
Sbjct: 212 KDEIKSEKKEPEIKKQEGGS-----STEKVGQPSSSDDKAKGSTSKDQPSEEE 259


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
 Frame = +1

Query: 100 VAATEVSAGNLP----SFISPCSASDPN---LNECIQKVIEVVAPKFADGIAELGIAPLD 258
           +AA+E+S  + P    SF+   S S+P+   L   +  + E  A  F D +++     +D
Sbjct: 191 IAASEISPSSSPQLLTSFLPSGSVSNPSSPYLQGSVGALYEADAFNFVDVMSQASGTEVD 250

Query: 259 PVQLGTVEVNNPAL 300
             +  +V+  +P+L
Sbjct: 251 SERFPSVDFEDPSL 264


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 317 SVNVIFSAGLLTSTVPSWTGSRGAIPSSAMPSANFGATTSIT 192
           S + + S    T +V S T      PSS++ S++  +TTS++
Sbjct: 851 STSSVTSTAYTTDSVTSTTALTSQGPSSSVVSSSLSSTTSLS 892


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +1

Query: 91   MAVVAATEVSAGNLPSFISPCSASDPNLNECIQKVIEV 204
            + +V + E+ A +  S IS  ++ D N +EC+ K IEV
Sbjct: 1735 LEIVESKEIYASD--SDISNSTSEDINKDECVSKDIEV 1770


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,609
Number of Sequences: 5004
Number of extensions: 54862
Number of successful extensions: 148
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)