Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2h24
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0781 + 11141469-11141486,11141855-11141978,11142024-111423...    30   1.6  
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912     30   1.6  
12_02_0858 + 23740589-23743233,23743362-23743503,23744778-237449...    29   2.9  
02_01_0138 + 999809-999821,1000456-1001341,1001424-1003221,10037...    29   5.0  
01_06_0030 + 25756294-25756575,25756977-25757101,25757276-257573...    28   6.6  
05_03_0591 + 15892772-15893412,15893478-15893910                       28   8.7  
02_02_0173 - 7433744-7433775,7434002-7434241,7434548-7437410           28   8.7  
01_05_0386 - 21683909-21685334,21685513-21685541                       28   8.7  

>03_02_0781 +
           11141469-11141486,11141855-11141978,11142024-11142340,
           11143219-11143509,11143751-11143956,11144048-11144327
          Length = 411

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +1

Query: 229 IAELGIAPLDPVQLGTVEVNNPALKITFTDTVVTGLRGSKINSYKINLDKGKATIDFTAN 408
           ++  GI       LG  +V     K TF   +V   + S +  Y +NLD    T+ F AN
Sbjct: 59  LSNFGIGSSGLKGLGLCDVGTG--KTTFMHRLVCHTQASNMRGYVLNLDPAVMTLPFGAN 116

Query: 409 VTLK 420
           + ++
Sbjct: 117 IDIR 120


>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
          Length = 853

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 274 TVEVNNPALKITFTDTVVTGLRGSKI-NSYKINLDKGKATIDFTANVTLKAHYVMDGQVL 450
           T++    +L    TD  +    G +  NSY INL      IDF++ VT  A  + DG ++
Sbjct: 69  TIKSTGISLYYEMTDAALRSFEGKRDGNSYLINLIDSPGHIDFSSEVT-AALRITDGALV 127

Query: 451 IL 456
           ++
Sbjct: 128 VV 129


>12_02_0858 + 23740589-23743233,23743362-23743503,23744778-23744990,
            23745083-23745190,23745378-23745587,23745881-23746055,
            23746197-23746264
          Length = 1186

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/39 (43%), Positives = 19/39 (48%)
 Frame = +1

Query: 121  AGNLPSFISPCSASDPNLNECIQKVIEVVAPKFADGIAE 237
            A  L S I  C   DPN N  +QK IE V P+F     E
Sbjct: 943  AKELNSNIMKC-IHDPNANHVVQKCIEHVPPRFIQFFVE 980


>02_01_0138 + 999809-999821,1000456-1001341,1001424-1003221,
            1003716-1003805,1004034-1004111,1004513-1004518,
            1004849-1004958,1005174-1005369
          Length = 1058

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = -1

Query: 516  GDHDSQVSDFNLSRSVASDGQDQHLTVHNVMSLQGDIGREV 394
            G+ +    +FNL  +VAS  QD+ + +H+ M  +GD GR V
Sbjct: 935  GEPEGLSFEFNLCEAVASWEQDELVKIHSPM--RGDPGRVV 973


>01_06_0030 +
           25756294-25756575,25756977-25757101,25757276-25757313,
           25757501-25757611,25757703-25757782,25758264-25758318,
           25758465-25758851,25759080-25759223,25759630-25759671,
           25759755-25759837
          Length = 448

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 246 YSQLSNAISELWSHHFYHFLYAFV 175
           +S  S +I  LW   FYHFLY  V
Sbjct: 370 FSLFSFSIYSLWFKGFYHFLYLLV 393


>05_03_0591 + 15892772-15893412,15893478-15893910
          Length = 357

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -1

Query: 333 AGDHGVCKRDLQRRIVDL 280
           A DHGV +R ++RR+VDL
Sbjct: 265 AADHGVTRRWVRRRVVDL 282


>02_02_0173 - 7433744-7433775,7434002-7434241,7434548-7437410
          Length = 1044

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 460 IRGNGPAKIKITNLRIVVTYDFTTVAGHWV-LTGYKDHYKMDRAQFKFNNLFG 615
           +RG  P+   +T+L++V+ Y     AG W  L+  K+   + +  F  NNL G
Sbjct: 370 LRGVIPSFSLMTDLQVVMLYSNQLEAGDWAFLSSLKNCSNLLKLHFGENNLRG 422


>01_05_0386 - 21683909-21685334,21685513-21685541
          Length = 484

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 332 PVTTVSVNVIFSAGLLTSTVPSWTGSRGAIPSSAMP 225
           P   +S+N   +  + TS+ P++  S  A+P+ A P
Sbjct: 435 PNAAMSINTAAATTMATSSSPTYNNSNAAMPAFAFP 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,495,155
Number of Sequences: 37544
Number of extensions: 403173
Number of successful extensions: 1055
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)