Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2h24
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z11505-1|CAA77582.1|  460|Caenorhabditis elegans Hypothetical pr...    31   0.64 
Z92806-4|CAB07259.1|  727|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U58761-4|AAB00715.1|  631|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical ...    28   5.9  

>Z11505-1|CAA77582.1|  460|Caenorhabditis elegans Hypothetical
           protein F59B2.2 protein.
          Length = 460

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
 Frame = +1

Query: 373 DKGKATIDFTANVTL--KAHYVMDGQVLILPIRG--NGP----AKIKITNLRIVVTYDFT 528
           DK  A  +FT  +T+   + Y  +GQ +ILPI    + P    A   + +  +++   F 
Sbjct: 225 DKLPAATNFTGTITMIGMSMYAFEGQTMILPIENKLDNPAAFLAPFGVLSTTMIICTAFM 284

Query: 529 TVAGHWVLTGYKD 567
           T  G +  TG+ D
Sbjct: 285 TALGFFGYTGFGD 297


>Z92806-4|CAB07259.1|  727|Caenorhabditis elegans Hypothetical
           protein K10G4.4 protein.
          Length = 727

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +1

Query: 298 LKITFTDTVVTGLRGSKINSYKINLDKGKATIDFT 402
           LK + ++T+V  +  SK  S K+ +D+G+  I+FT
Sbjct: 566 LKYSISNTLVKKIEASKNWSLKVKIDEGQVQINFT 600


>U58761-4|AAB00715.1|  631|Caenorhabditis elegans Hypothetical
           protein C01F1.3a protein.
          Length = 631

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = +1

Query: 469 NGPAKIKITNLRIVVTYDFTTVAGHWVLTGYKDHYKMDRAQFKFNNLFGGNK-ELAQTTE 645
           N   K++ + L     Y  T +AG   +  Y+  Y +     + NN++G N+ ++     
Sbjct: 144 NEQGKVEFSRLVPGNPYAATKIAGEAYVRAYQTQYNLPIVTARMNNIYGPNQWDVKVVPR 203

Query: 646 KIHQSKL-GDYNARNS 690
            I  +K+ G+Y  + S
Sbjct: 204 FIEIAKVRGEYTIQGS 219


>AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical
           protein H28G03.4 protein.
          Length = 459

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -1

Query: 417 QGDIGREVYRCFAFI*IYFVTINFRSPQAGDHGVCKRDLQRR 292
           + D   E YRC   I   F   N R  +   HGV  R++ RR
Sbjct: 52  ENDFKNEKYRCAEIIGNLFARANLRFFRWLSHGVSARNISRR 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,783,403
Number of Sequences: 27780
Number of extensions: 320343
Number of successful extensions: 865
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)