Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2h23
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 82 8e-17
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 80 3e-16
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 75 1e-14
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 27 2.5
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 27 2.5
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 27 2.5
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 27 2.5
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 27 3.4
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 26 4.4
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 5.9
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 81.8 bits (193), Expect = 8e-17
Identities = 45/111 (40%), Positives = 61/111 (54%)
Frame = +3
Query: 84 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 263
+S +ELA YSALIL D+ + +T +K+ ++ KAA VDVEP W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60
Query: 264 NIGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 416
NIGSG SD+DMGFGLFD
Sbjct: 61 NIGSG--AGAAPVAGGAAAPAAADGEAPAEEKEEAKEEEESDEDMGFGLFD 109
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 79.8 bits (188), Expect = 3e-16
Identities = 44/111 (39%), Positives = 60/111 (54%)
Frame = +3
Query: 84 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 263
+S +ELA YSALIL D+ + +T +K+ ++ KAA VDVEP W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60
Query: 264 NIGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 416
NIGS SD+DMGFGLFD
Sbjct: 61 NIGSA-AAAPAAGGAGAPAAAAGGEAAAEEQKEEAKEEEESDEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 74.9 bits (176), Expect = 1e-14
Identities = 41/111 (36%), Positives = 59/111 (53%)
Frame = +3
Query: 84 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 263
+S +ELA Y+ALIL D+ + +T +K+ ++ KA V+VEP W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLL 60
Query: 264 NIGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 416
NIGS SD+DMGFGLFD
Sbjct: 61 NIGSA--GAASAPTAAGAGAAAPAEAAEEEKKEEAKEEEESDEDMGFGLFD 109
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 27.1 bits (57), Expect = 2.5
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 384 SDDDMGFGLFD 416
SD+DMGFGLFD
Sbjct: 302 SDEDMGFGLFD 312
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 2.5
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 384 SDDDMGFGLFD 416
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 2.5
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 384 SDDDMGFGLFD 416
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 2.5
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 384 SDDDMGFGLFD 416
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 26.6 bits (56), Expect = 3.4
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +3
Query: 66 RSKLKMVSKAELACVYSALILVD-DDV--AVTGEKISTILKAAAVDVEPYWPGLFAKALE 236
R+ L+ + E S L+L + DV A++ E+IS IL + +W AL
Sbjct: 103 RNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILNISKYK-SSHWRIFSVSALT 161
Query: 237 GINVRDLIT 263
G+N++D I+
Sbjct: 162 GLNIKDAIS 170
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 649 FNHLYIG*SGYANFTKCVGKLIGNTSPTLL 560
FNH Y+ +G FTK +++ +P LL
Sbjct: 66 FNHEYLPIAGLPRFTKAAAEVLFRPNPHLL 95
>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 263
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 498 NKLNKTIVFFPFSIMAYVYMNSSVGLVL 581
N+ + +VFF SI AYV + ++ G +L
Sbjct: 126 NETSDELVFFQHSIPAYVQLTNNHGTIL 153
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,322,220
Number of Sequences: 5004
Number of extensions: 40808
Number of successful extensions: 100
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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