Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2h17
(781 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81453-8|CAB03798.1| 299|Caenorhabditis elegans Hypothetical pr... 157 1e-38
AL031630-23|CAA21003.1| 299|Caenorhabditis elegans Hypothetical... 157 1e-38
Z70311-11|CAA94380.1| 484|Caenorhabditis elegans Hypothetical p... 46 3e-05
Z70306-6|CAA94326.1| 484|Caenorhabditis elegans Hypothetical pr... 46 3e-05
Z83219-1|CAB05694.1| 322|Caenorhabditis elegans Hypothetical pr... 33 0.30
Z22178-1|CAA80153.1| 298|Caenorhabditis elegans Hypothetical pr... 32 0.53
Z99281-40|CAB16512.1| 268|Caenorhabditis elegans Hypothetical p... 31 1.2
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 29 3.7
AC024859-26|AAK29977.2| 300|Caenorhabditis elegans Hypothetical... 29 4.9
EF473218-1|ABQ42570.1| 765|Caenorhabditis elegans Y55D9A.1c pro... 28 6.5
EF473217-1|ABQ42569.1| 818|Caenorhabditis elegans Y55D9A.1b pro... 28 6.5
AL032649-5|CAM82814.1| 765|Caenorhabditis elegans Hypothetical ... 28 6.5
AL032649-2|CAC70120.1| 818|Caenorhabditis elegans Hypothetical ... 28 6.5
AL032649-1|CAA21701.1| 816|Caenorhabditis elegans Hypothetical ... 28 6.5
Z68748-12|CAN86588.1| 792|Caenorhabditis elegans Hypothetical p... 28 8.6
Z68748-10|CAL36500.1| 789|Caenorhabditis elegans Hypothetical p... 28 8.6
Z68748-9|CAL36499.1| 796|Caenorhabditis elegans Hypothetical pr... 28 8.6
U80448-8|AAB37821.3| 1014|Caenorhabditis elegans Hypothetical pr... 28 8.6
AC087079-14|AAM81101.1| 392|Caenorhabditis elegans Nuclear pore... 28 8.6
AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore... 28 8.6
>Z81453-8|CAB03798.1| 299|Caenorhabditis elegans Hypothetical
protein B0250.5 protein.
Length = 299
Score = 157 bits (380), Expect = 1e-38
Identities = 87/211 (41%), Positives = 118/211 (55%), Gaps = 1/211 (0%)
Frame = +2
Query: 152 FLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXSIL 331
F+GLGNMGG MA NL+K G + YD +K + G A ++L
Sbjct: 6 FIGLGNMGGHMARNLIKNGKKLIVYDVNKAVVQEFKAEGCEVAAHPADIAAASKEIITVL 65
Query: 332 TSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGV 511
S+ V VY G+ G+ + G+L +DSSTID V ++ A + DAP+SGGV
Sbjct: 66 PSSPHVKAVYQGEAGIFKTIQPGTLCMDSSTIDQIVSLEVAQAAALLKAEYIDAPISGGV 125
Query: 512 MGAQNATLAFMAG-GRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMA 688
GAQ ATL FM G G F+R+ +L +MG + G +G+G AK+ NNML+GI +A
Sbjct: 126 TGAQQATLTFMVGAGNDATFKRAEAVLSLMGKNIVNLGAVGNGTAAKICNNMLLGIQMVA 185
Query: 689 TAECMNMGIKMGLEPKVLLDVLNNSSARSWS 781
AE MN+GI MGL+ K L ++N SS R WS
Sbjct: 186 VAETMNLGISMGLDAKALAGIVNTSSGRCWS 216
>AL031630-23|CAA21003.1| 299|Caenorhabditis elegans Hypothetical
protein B0250.5 protein.
Length = 299
Score = 157 bits (380), Expect = 1e-38
Identities = 87/211 (41%), Positives = 118/211 (55%), Gaps = 1/211 (0%)
Frame = +2
Query: 152 FLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXSIL 331
F+GLGNMGG MA NL+K G + YD +K + G A ++L
Sbjct: 6 FIGLGNMGGHMARNLIKNGKKLIVYDVNKAVVQEFKAEGCEVAAHPADIAAASKEIITVL 65
Query: 332 TSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGV 511
S+ V VY G+ G+ + G+L +DSSTID V ++ A + DAP+SGGV
Sbjct: 66 PSSPHVKAVYQGEAGIFKTIQPGTLCMDSSTIDQIVSLEVAQAAALLKAEYIDAPISGGV 125
Query: 512 MGAQNATLAFMAG-GRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMA 688
GAQ ATL FM G G F+R+ +L +MG + G +G+G AK+ NNML+GI +A
Sbjct: 126 TGAQQATLTFMVGAGNDATFKRAEAVLSLMGKNIVNLGAVGNGTAAKICNNMLLGIQMVA 185
Query: 689 TAECMNMGIKMGLEPKVLLDVLNNSSARSWS 781
AE MN+GI MGL+ K L ++N SS R WS
Sbjct: 186 VAETMNLGISMGLDAKALAGIVNTSSGRCWS 216
>Z70311-11|CAA94380.1| 484|Caenorhabditis elegans Hypothetical
protein T25B9.9 protein.
Length = 484
Score = 46.0 bits (104), Expect = 3e-05
Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 11/186 (5%)
Frame = +2
Query: 137 DKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPS----KDAL-NAAAKNGVTPANSIXXXX 301
+ ++A +GL MG + N+ GFTV ++ + D L N A + A+SI
Sbjct: 3 EADIAVIGLAVMGQNLILNMNDHGFTVCAFNRTVKLVDDFLANEAKGTKIIGAHSIEEMC 62
Query: 302 XXXXXXXSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLG 481
++ K V + D +V H ++G ++ID + + KG+
Sbjct: 63 KKLKRPRRVMMLIKAGTPVDMMIDAIVPHLEEGDIIIDGGNSEYTDSNRRSEQLAAKGIM 122
Query: 482 FTDAPVSGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQ--FHC----GQIGSGQV 643
F VSGG GA+ + M GG + + + + + AK C G GSG
Sbjct: 123 FVGCGVSGGEEGARFGP-SLMPGGNPKAWPHLKDIFQKIAAKSNGEPCCDWVGNAGSGHF 181
Query: 644 AKLTNN 661
K+ +N
Sbjct: 182 VKMVHN 187
>Z70306-6|CAA94326.1| 484|Caenorhabditis elegans Hypothetical
protein T25B9.9 protein.
Length = 484
Score = 46.0 bits (104), Expect = 3e-05
Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 11/186 (5%)
Frame = +2
Query: 137 DKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPS----KDAL-NAAAKNGVTPANSIXXXX 301
+ ++A +GL MG + N+ GFTV ++ + D L N A + A+SI
Sbjct: 3 EADIAVIGLAVMGQNLILNMNDHGFTVCAFNRTVKLVDDFLANEAKGTKIIGAHSIEEMC 62
Query: 302 XXXXXXXSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLG 481
++ K V + D +V H ++G ++ID + + KG+
Sbjct: 63 KKLKRPRRVMMLIKAGTPVDMMIDAIVPHLEEGDIIIDGGNSEYTDSNRRSEQLAAKGIM 122
Query: 482 FTDAPVSGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQ--FHC----GQIGSGQV 643
F VSGG GA+ + M GG + + + + + AK C G GSG
Sbjct: 123 FVGCGVSGGEEGARFGP-SLMPGGNPKAWPHLKDIFQKIAAKSNGEPCCDWVGNAGSGHF 181
Query: 644 AKLTNN 661
K+ +N
Sbjct: 182 VKMVHN 187
>Z83219-1|CAB05694.1| 322|Caenorhabditis elegans Hypothetical
protein C31C9.2 protein.
Length = 322
Score = 32.7 bits (71), Expect = 0.30
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +2
Query: 140 KNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKN 265
+ +A LGLG +G +A L G V G+DP A AKN
Sbjct: 146 RTLAVLGLGRIGSEVAVRLQAFGMKVIGFDPMVTKEQAEAKN 187
>Z22178-1|CAA80153.1| 298|Caenorhabditis elegans Hypothetical
protein F54C8.1 protein.
Length = 298
Score = 31.9 bits (69), Expect = 0.53
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +2
Query: 140 KNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAK 262
+NVA +G G MG +A GF V D +K AL+ A K
Sbjct: 12 RNVAIVGSGQMGSGIAQVTASSGFNVMLADVNKKALDRAMK 52
>Z99281-40|CAB16512.1| 268|Caenorhabditis elegans Hypothetical
protein Y57G11C.11a protein.
Length = 268
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 161 LGNMGGFMAANLVKKGFTVRGYDPSKDALNAA 256
+G+ GG ++ L + GF V G D +K A+ AA
Sbjct: 82 VGSGGGLLSIPLARSGFDVTGIDATKQAVEAA 113
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
W01F3.3 protein.
Length = 2175
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = -2
Query: 639 CPEPICPQWNCLAPITLRRGRDLSKSSLRPPAMKARVAF*APMTPPDTGASVNPSPFSRA 460
C E ICPQ P + GR + +PPA +R P T + P+P S+
Sbjct: 991 CEECICPQ-TAPTPPHVPTGRPTTVGQAQPPASSSRRVTEVGPPAPRTTEAAPPAPSSQP 1049
Query: 459 IGKICLGT 436
+ + T
Sbjct: 1050 PRQFAVNT 1057
>AC024859-26|AAK29977.2| 300|Caenorhabditis elegans Hypothetical
protein Y71H2AM.2 protein.
Length = 300
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 672 PINMLLVSLATCPEPICPQWNCLAPITLRRGRDLSKSSLRPP 547
P N LL+ A+ CP+ NC ITL RD +++R P
Sbjct: 103 PCNCLLICKASSTRIACPRNNCRRVITLAGQRD-PGTAIRAP 143
>EF473218-1|ABQ42570.1| 765|Caenorhabditis elegans Y55D9A.1c
protein.
Length = 765
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -2
Query: 759 LFSTSNRTFGSSPILMPMFMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPIT 592
LF TSN+ F+ +A + P +P+ + T P P P+ CLAPIT
Sbjct: 607 LFQTSNQKELQEWCEKINFVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPIT 661
>EF473217-1|ABQ42569.1| 818|Caenorhabditis elegans Y55D9A.1b
protein.
Length = 818
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -2
Query: 759 LFSTSNRTFGSSPILMPMFMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPIT 592
LF TSN+ F+ +A + P +P+ + T P P P+ CLAPIT
Sbjct: 660 LFQTSNQKELQEWCEKINFVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPIT 714
>AL032649-5|CAM82814.1| 765|Caenorhabditis elegans Hypothetical
protein Y55D9A.1c protein.
Length = 765
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -2
Query: 759 LFSTSNRTFGSSPILMPMFMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPIT 592
LF TSN+ F+ +A + P +P+ + T P P P+ CLAPIT
Sbjct: 607 LFQTSNQKELQEWCEKINFVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPIT 661
>AL032649-2|CAC70120.1| 818|Caenorhabditis elegans Hypothetical
protein Y55D9A.1b protein.
Length = 818
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -2
Query: 759 LFSTSNRTFGSSPILMPMFMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPIT 592
LF TSN+ F+ +A + P +P+ + T P P P+ CLAPIT
Sbjct: 660 LFQTSNQKELQEWCEKINFVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPIT 714
>AL032649-1|CAA21701.1| 816|Caenorhabditis elegans Hypothetical
protein Y55D9A.1a protein.
Length = 816
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -2
Query: 759 LFSTSNRTFGSSPILMPMFMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPIT 592
LF TSN+ F+ +A + P +P+ + T P P P+ CLAPIT
Sbjct: 658 LFQTSNQKELQEWCEKINFVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPIT 712
>Z68748-12|CAN86588.1| 792|Caenorhabditis elegans Hypothetical
protein F13H10.4c protein.
Length = 792
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 308 LHQRLQQW-SWLASLRSWPLRSVHLWKDRSREL 213
L+ RL++W W+ +S P R+ + W+ R+ +
Sbjct: 484 LYPRLEKWFHWIRITQSGPTRTTYRWRGRNETI 516
>Z68748-10|CAL36500.1| 789|Caenorhabditis elegans Hypothetical
protein F13H10.4b protein.
Length = 789
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 308 LHQRLQQW-SWLASLRSWPLRSVHLWKDRSREL 213
L+ RL++W W+ +S P R+ + W+ R+ +
Sbjct: 481 LYPRLEKWFHWIRITQSGPTRTTYRWRGRNETI 513
>Z68748-9|CAL36499.1| 796|Caenorhabditis elegans Hypothetical
protein F13H10.4a protein.
Length = 796
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 308 LHQRLQQW-SWLASLRSWPLRSVHLWKDRSREL 213
L+ RL++W W+ +S P R+ + W+ R+ +
Sbjct: 488 LYPRLEKWFHWIRITQSGPTRTTYRWRGRNETI 520
>U80448-8|AAB37821.3| 1014|Caenorhabditis elegans Hypothetical
protein F59A3.1 protein.
Length = 1014
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = -1
Query: 460 YREDLFGNIRIYCTRIDQKRSFFRMSHNAIFAQVHVEHDFIAGQYG--NDHVDSINGCSN 287
Y + + G IY D K F +S+ +A+ H + + G D + ING +N
Sbjct: 261 YDDSVTGQDGIYTASADDKL-FVELSYR--YARAHTKMWKTGRRCGLSADGDNFINGITN 317
Query: 286 GVGWRH 269
G GW H
Sbjct: 318 GAGWYH 323
>AC087079-14|AAM81101.1| 392|Caenorhabditis elegans Nuclear pore
complex protein protein13, isoform b protein.
Length = 392
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +2
Query: 503 GGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQ--FHCGQIGSGQVAKLTNNMLMGI 676
GG+ G + AF+ G +E F+ + M Q +HC + G + A T N L
Sbjct: 265 GGIPGTRGLVNAFLKVGTEESFQPEDDSIDGMPTWQVTYHCVRAGDMKSASETLNRLKSF 324
Query: 677 TGMAT 691
AT
Sbjct: 325 PQCAT 329
>AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore
complex protein protein13, isoform a protein.
Length = 787
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +2
Query: 503 GGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQ--FHCGQIGSGQVAKLTNNMLMGI 676
GG+ G + AF+ G +E F+ + M Q +HC + G + A T N L
Sbjct: 265 GGIPGTRGLVNAFLKVGTEESFQPEDDSIDGMPTWQVTYHCVRAGDMKSASETLNRLKSF 324
Query: 677 TGMAT 691
AT
Sbjct: 325 PQCAT 329
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,134,964
Number of Sequences: 27780
Number of extensions: 468627
Number of successful extensions: 1264
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -