Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2h16
         (436 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_02_0011 - 8513471-8513673,8513815-8513869                           29   1.2  
05_04_0354 - 20545574-20545627,20546430-20546754,20547219-20547802     27   5.0  
01_06_1227 + 35531840-35532516,35532665-35532836,35533158-355333...    27   6.6  

>04_02_0011 - 8513471-8513673,8513815-8513869
          Length = 85

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 213 APCTTIGSTCLDCTTKQVCTKVXGIQRACLDPT-LPYCNLGECSATP 350
           AP T +   C+D T K +C+     +  C     L YCN   C+ +P
Sbjct: 33  APITEVPKPCVDATCKAICSDKYQSKGECFSTDGLYYCNF--CANSP 77


>05_04_0354 - 20545574-20545627,20546430-20546754,20547219-20547802
          Length = 320

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 218 RSPLRVPGSGCDPWRYPRVDCAIVPASPTAG 126
           R P ++P     P+ +PR D A+ P+SP  G
Sbjct: 40  RQPAKIPA----PFVWPRADVALPPSSPPTG 66


>01_06_1227 +
           35531840-35532516,35532665-35532836,35533158-35533357,
           35533467-35533622,35536878-35537235,35537407-35537418
          Length = 524

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 110 TCHRWCRRLGRLEQWRSQPLDTSMDR 187
           TC R  RR    ++WR QP D SM R
Sbjct: 201 TCMRNGRRDDTYQKWRWQPKDCSMPR 226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,179,712
Number of Sequences: 37544
Number of extensions: 223412
Number of successful extensions: 700
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)