Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2h13
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0479 + 17627605-17627839,17628965-17629107,17630018-176301...    31   0.89 
12_02_0019 - 12366259-12366819,12367653-12367685,12368294-123683...    31   1.2  
02_05_0860 - 32296743-32296769,32297328-32297357,32298432-322985...    31   1.2  
06_01_0665 - 4855870-4855956,4856407-4856482,4856794-4856910,485...    30   1.6  
11_06_0052 - 19652594-19652703,19653406-19653586,19653659-196537...    28   8.3  

>08_02_0479 +
           17627605-17627839,17628965-17629107,17630018-17630137,
           17630497-17630721
          Length = 240

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 22/67 (32%), Positives = 30/67 (44%)
 Frame = +2

Query: 230 QPPPYSAAVPPDFPPVTNLVELIFCQSNSKSLMCFSIFYLFAGGLRDYSSYAQMKLMGST 409
           +P PY+AA  P         EL+F    +  L+C  +F   AG LR   +    KL   +
Sbjct: 21  RPSPYAAAAAPSPDAAAPPAELLFRPRRAAVLIC--LFRGAAGELRVLLTKRSSKLSSHS 78

Query: 410 SENSDPG 430
            E S PG
Sbjct: 79  GEVSLPG 85


>12_02_0019 -
           12366259-12366819,12367653-12367685,12368294-12368363,
           12368582-12368712,12369627-12369673,12369803-12369879,
           12369963-12370027,12370105-12370191,12370300-12370389,
           12370972-12371037,12371608-12371664,12371749-12371850,
           12373018-12373554
          Length = 640

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/47 (42%), Positives = 28/47 (59%)
 Frame = +3

Query: 360 AYGTIPATHR*NSWAQHLRIPIRASTAYIPTGI*SARCTFSPTTSGL 500
           A  +I +T   +SWA++L+IP  +S    PTG    + TFS  TSGL
Sbjct: 74  AQSSIFSTSGLSSWAKNLKIPQPSSGQESPTG----KNTFSRLTSGL 116


>02_05_0860 -
           32296743-32296769,32297328-32297357,32298432-32298503,
           32298967-32299812
          Length = 324

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +2

Query: 206 MEKPTVTEQPPPYSAAVPPDFPPVTNLVELIFCQSN 313
           M  P V   P P +AAVPP  PP      ++F QSN
Sbjct: 148 MSVPPVPPAPTPTAAAVPPP-PPPQQQTPMLFGQSN 182


>06_01_0665 -
           4855870-4855956,4856407-4856482,4856794-4856910,
           4857062-4857127,4858578-4858670,4858788-4858909,
           4859810-4860365,4860485-4860628,4860698-4860831,
           4861003-4861100,4861172-4861353,4861464-4861540,
           4862083-4862305,4862580-4862745,4862836-4863040,
           4864981-4865199
          Length = 854

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 592 GACPACRVGILEDDFTCLGILCAIL 666
           G CP CRV +L  DF C    CA+L
Sbjct: 40  GCCP-CRVVVLPPDFCCADAWCALL 63


>11_06_0052 -
           19652594-19652703,19653406-19653586,19653659-19653717,
           19653873-19654022,19654719-19654827,19654879-19654933,
           19654985-19654989,19656837-19656958,19657181-19657241
          Length = 283

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 310 KFKEFDVLLYLLPICWWPTGLFQLRTDETHGLNI 411
           +FKE D LL +LPI     GL   R+D+  G ++
Sbjct: 222 QFKESDGLLNILPISAESAGLLPSRSDKPQGSDL 255


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,409,691
Number of Sequences: 37544
Number of extensions: 432955
Number of successful extensions: 1676
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1664
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)