Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2h13
(705 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54238-6|CAA90999.2| 119|Caenorhabditis elegans Hypothetical pr... 36 0.021
AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical... 30 1.9
AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical ... 29 3.2
AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical ... 28 5.7
AF067609-10|AAC17537.1| 163|Caenorhabditis elegans Ground-like ... 28 5.7
Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z70213-1|CAA94175.1| 1354|Caenorhabditis elegans Hypothetical pr... 28 7.5
U80437-4|AAK68244.1| 90|Caenorhabditis elegans Neurabin protei... 27 9.9
L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying defe... 27 9.9
>Z54238-6|CAA90999.2| 119|Caenorhabditis elegans Hypothetical
protein T28C6.8 protein.
Length = 119
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 595 ACPACRVGILEDDFTCLGILCAILFFPLGILCCLALK 705
+CPAC ++ F+ IL AI FP GI CC+ K
Sbjct: 10 SCPACTQKKVKSRFSWRAILYAIFCFPCGIYCCMKRK 46
>AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical
protein Y69A2AR.31 protein.
Length = 1219
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 486 TTSGL*SIWCSSSTNRLCTKLRSHKHYNTTSYNHSRS 596
T SGL C+SS + C +R H +YN Y S+S
Sbjct: 255 TWSGLGDCQCASSNSSDCHWIRLHTNYNKCIYEISKS 291
>AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical
protein Y39D8B.1 protein.
Length = 1372
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 194 LFSIMEKPTVTEQPPPYSAAVPPDFPPVTNLVELIFCQSNSK 319
+ S E PTV+ PPP + + P+FP + N+ + F S K
Sbjct: 24 IISRREVPTVST-PPPQQSTLLPNFPWLENIPKFEFTTSKPK 64
>AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical
protein F13C5.1 protein.
Length = 437
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +2
Query: 425 PGFNRIHTHRHLIRQVHLFPHHLRAIVHMVL-LLHKQALYQ--ATEPQTL 565
P F +IH H H + +F H +H+VL LL K +Y + PQTL
Sbjct: 44 PSFFQIHRHTH-THTILVFVVHFFISIHLVLSLLLKIVIYSLFSGAPQTL 92
>AF067609-10|AAC17537.1| 163|Caenorhabditis elegans Ground-like
(grd related) protein20 protein.
Length = 163
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 273 GGKSGGTAAEYGGGCSVTVGFSIILNN 193
GG GG GGGC T+G S+I N
Sbjct: 30 GGCGGGCGGGGGGGCLPTLGCSVISFN 56
>Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical
protein F36D3.5 protein.
Length = 1152
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = +2
Query: 383 AQMKLMGSTS----ENSDPGFNRIHTHRHLIRQVHLFPHHLRAIVHMVLLLHKQALYQAT 550
+++K++ TS ++ P + + L++ F HH I ++L++HK LY
Sbjct: 466 SELKIVEKTSAGIYDSDGPNLGDLVSELELVKTSQCFSHHSETIQELMLIVHK--LYSTR 523
Query: 551 EP 556
P
Sbjct: 524 YP 525
>Z70213-1|CAA94175.1| 1354|Caenorhabditis elegans Hypothetical protein
ZK930.1 protein.
Length = 1354
Score = 27.9 bits (59), Expect = 7.5
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Frame = +2
Query: 203 IMEKPTVTEQPPPYSAAVPPDFPPVTNLVELIFCQSNSKSLMCFSIFYLFAGGLRD-YSS 379
I E+ TVT P PYS F N + + + +++ C L A S+
Sbjct: 882 IEEERTVTNTPAPYSPVKNTTFDNQVNEMLAHLNELHMRNVNCRPKRPLAASASHPVLSA 941
Query: 380 YAQMKLMGSTSENSDPGFNRIHTHRH 457
+GS+S N+ G H H H
Sbjct: 942 SPSAGSLGSSSNNNVKGIIITHLHEH 967
>U80437-4|AAK68244.1| 90|Caenorhabditis elegans Neurabin protein
1, isoform c protein.
Length = 90
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 215 PTVTEQPPPYSAAVPPDFPPVTNLVELIFCQSNSKSLMCFSIFYLFAG 358
P + QPPP PP P + + ++ + + SL + +LF+G
Sbjct: 38 PRLQRQPPPPLPPKPPSQCPPSPMSQVCVIKQSHGSLSLSLLLFLFSG 85
>L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying
defective protein 45 protein.
Length = 1076
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/84 (23%), Positives = 36/84 (42%)
Frame = +2
Query: 359 GLRDYSSYAQMKLMGSTSENSDPGFNRIHTHRHLIRQVHLFPHHLRAIVHMVLLLHKQAL 538
GL + +++ E D R T R L +Q F HH+RA+ H+ L ++A+
Sbjct: 668 GLEQFRDMDPEQVLREQRERLDK--ERAETQRRLQQQEKNFDHHVRAL-HLEELNERRAV 724
Query: 539 YQATEPQTL*YHQL*SQSELAPHV 610
+ H L ++ +A +
Sbjct: 725 MNMRLSEAPKLHDLYEEARIAKEI 748
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,598,192
Number of Sequences: 27780
Number of extensions: 367213
Number of successful extensions: 1195
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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