Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2h12
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.09c |||mitochondrial ribosomal protein subunit L12|Schiz...    75   8e-15
SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|ch...    27   3.6  
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    26   4.7  
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    26   4.7  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    26   6.3  

>SPCC4B3.09c |||mitochondrial ribosomal protein subunit
           L12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 206

 Score = 75.4 bits (177), Expect = 8e-15
 Identities = 47/132 (35%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
 Frame = +3

Query: 246 KIEKIVFEITNLNLLEVSELSQVLKKRLNLPDXXXXXXXXXXXXXXXXXXXXXXXXXXXX 425
           +I ++V +I++L+LLE SEL + LK++LN+ +                            
Sbjct: 76  QIGEMVDKISSLSLLETSELVKQLKEKLNIAEIAPMAAVAPAVASAAPSEEKAPEEKKEE 135

Query: 426 -TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLKE 602
            T++ +K+  FD   K  +IKEVK LL G +LV AKKFVES P V+K +I K++AE +K 
Sbjct: 136 KTTWNLKLESFDAGSKAKVIKEVKSLL-GLSLVDAKKFVESAPKVLKENILKEDAEAIKS 194

Query: 603 ALTKVGAIIEIE 638
            L K+   + +E
Sbjct: 195 KLEKLSCKVVLE 206


>SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 209

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 404 LFFINSSRWSHC-ESAHWHNWSVGQVQS 324
           LFF NSSR+S C ES  W  +S G V S
Sbjct: 136 LFFSNSSRFSACEESGEWVIYS-GDVYS 162


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
 Frame = +3

Query: 48  SQTNIILFENLSKNKTRNMNGIRIIKNVNLQWRSLSRCSVLRQEVTQTVTPLTIPVPEGV 227
           S+T  I F   S NKTR +NG    +   +    L  CS    E+     P+  P   G 
Sbjct: 64  SETLAIAFYLASLNKTRALNGTTAEEKAKV----LQYCSFTNSELPGAFRPIIAPRVFGA 119

Query: 228 --DKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPD 341
             D+  + + E  +  I      E++  + ++  RL L D
Sbjct: 120 PYDEQAAKEAETAIALIFARFDEELASKTYLVGSRLTLAD 159


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 501 LEGFNLVQAKKFVESVPTVVKADISKD 581
           ++GF + + KK  + +PTV  AD  KD
Sbjct: 533 IDGFFVAKLKKISDKIPTVNVADDMKD 559


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 462 KQKVALIKEVKGLLEGFNL--VQAKKFVESVPTV 557
           KQ VA IKE+  LLE F +  +    F + +PT+
Sbjct: 142 KQAVASIKELNSLLENFGIPALSPIPFYKLIPTL 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,467,101
Number of Sequences: 5004
Number of extensions: 44674
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)