Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2h12
(723 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1038 - 29879965-29880492 58 5e-09
07_03_1338 - 25877235-25877738 58 9e-09
05_07_0049 - 27327804-27328400 56 3e-08
02_01_0745 - 5550472-5551053 54 1e-07
05_07_0157 - 28079181-28079720 46 4e-05
05_01_0488 - 4070506-4072277,4072455-4072557 30 2.1
02_04_0534 + 23725051-23726253 29 3.7
06_01_1138 - 9429447-9433868 28 8.6
>03_05_1038 - 29879965-29880492
Length = 175
Score = 58.4 bits (135), Expect = 5e-09
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 6/139 (4%)
Frame = +3
Query: 240 SPKIEKIVFEITNLNLLEVSELSQVLKKRLN---LPDXXXXXXXXXXXXXXXXXXXXXXX 410
+P++ +V EI L L+E S L+ L+ RL LP
Sbjct: 38 TPRVSALVDEICGLTLIEASSLTDALRGRLGVDQLPPLAILTGGAAPLAGGGAATGAAGE 97
Query: 411 XXXXXT---SFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKD 581
+F VK+ FD K+ +IKE++ L +AK+ VE P V+KA + K+
Sbjct: 98 EAKAKEEKMAFDVKLEGFDAAAKLKIIKELRAFTN-LGLKEAKELVEKAPAVLKAGVPKE 156
Query: 582 EAEKLKEALTKVGAIIEIE 638
EAE + E + +GA I +E
Sbjct: 157 EAESIAEKMRAIGAKIVLE 175
>07_03_1338 - 25877235-25877738
Length = 167
Score = 57.6 bits (133), Expect = 9e-09
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 3/135 (2%)
Frame = +3
Query: 243 PKIEKIVFEITNLNLLEVSELSQVLKKRLNLP---DXXXXXXXXXXXXXXXXXXXXXXXX 413
PK+ +I ++ L+ E+ + S +L+ +L L
Sbjct: 34 PKLSRIADQLLELSPAELDDYSALLRLKLRLSLTSSAASGAAATGAAGDAASGSAGAEEA 93
Query: 414 XXXXTSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEK 593
TSF VK+ K++ K+ +IKEV+ + + L +AK+ VE P VV++ + K+EAE
Sbjct: 94 AAVKTSFDVKIEKYEAAAKIKIIKEVRAVTD-LGLKEAKELVEKAPVVVRSGLPKEEAEA 152
Query: 594 LKEALTKVGAIIEIE 638
L L GA + +E
Sbjct: 153 LAAKLKAAGAAVALE 167
>05_07_0049 - 27327804-27328400
Length = 198
Score = 56.0 bits (129), Expect = 3e-08
Identities = 44/193 (22%), Positives = 88/193 (45%), Gaps = 12/193 (6%)
Frame = +3
Query: 96 RNMNGIRIIKNVNLQWRSLSRCSVLRQ-EVTQTVTPLTIPV--PEGVDKPV-SPKIEKIV 263
R+ + +R++++ +L W S S + +V + T P +P S ++ ++V
Sbjct: 7 RSGHRLRLLRHGSLSWASFSAAAAEELIDVRKLPTDYDASTFDPTAPSRPPPSDRVWRLV 66
Query: 264 FEITNLNLLEVSELSQVLKKRLNLP--------DXXXXXXXXXXXXXXXXXXXXXXXXXX 419
++++L L E + LS +L +RL++P
Sbjct: 67 EDVSSLTLAESAALSALLLRRLDVPAPPIAILNSAAGLGGGGGAGAAGAAGEKAGGAAAA 126
Query: 420 XXTSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLK 599
T F +++ FD K+ +IKE++ + L +AK+ VE P V+K +SK+EA +
Sbjct: 127 EKTVFELRLEAFDAASKIKVIKEIRSFTD-LGLKEAKELVEKAPAVIKGGVSKEEARTII 185
Query: 600 EALTKVGAIIEIE 638
+ + VGA + ++
Sbjct: 186 DKMKAVGAKVVMD 198
>02_01_0745 - 5550472-5551053
Length = 193
Score = 54.0 bits (124), Expect = 1e-07
Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 4/145 (2%)
Frame = +3
Query: 216 PEGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPDXXXXXXXXXXXXXXXXXX 395
P G P S K+ + I L E+ +++ L RLN P
Sbjct: 50 PYGPMSPPSQKVVDLADRIAALPPEEIKQIAPALLLRLNQPPPQAISGQGFSFSPQGGGG 109
Query: 396 XXXXXXXXXX----TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVK 563
T F VK+ KFD K+ +IKE++ + L +AK+ VE P ++K
Sbjct: 110 AAGAAKAEEKKAEKTVFDVKLEKFDAAAKIKIIKEIRTFTD-LGLKEAKELVEKAPVILK 168
Query: 564 ADISKDEAEKLKEALTKVGAIIEIE 638
++K+EAE + E + G + +E
Sbjct: 169 QSLTKEEAEAIIEKIKVAGGVAVME 193
>05_07_0157 - 28079181-28079720
Length = 179
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/70 (35%), Positives = 39/70 (55%)
Frame = +3
Query: 426 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEA 605
T F V + + ++A IK V+ L L +AK +E +P K +SK+EAE+ K+
Sbjct: 110 TEFDVVIEEVPSSARIATIKVVRALTN-LALKEAKDLIEGLPKKAKEAVSKEEAEEAKKQ 168
Query: 606 LTKVGAIIEI 635
L +VGA + I
Sbjct: 169 LEEVGAKVSI 178
>05_01_0488 - 4070506-4072277,4072455-4072557
Length = 624
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/66 (27%), Positives = 41/66 (62%)
Frame = +3
Query: 441 KMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEALTKVG 620
++++ ++KQ+V+ + E L + + V+++K E++ VV ++KDE ++LKE++
Sbjct: 215 ELSEHEEKQQVSDV-ETSSLQKDLDEVKSEK--EALEAVVL--VNKDEIDRLKESMVSAA 269
Query: 621 AIIEIE 638
E+E
Sbjct: 270 KQFEVE 275
>02_04_0534 + 23725051-23726253
Length = 400
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 189 TVTPLTIPVPEGVDKPVSPK 248
TV T+P+PEG D PV PK
Sbjct: 99 TVVQETLPLPEGGDHPVPPK 118
>06_01_1138 - 9429447-9433868
Length = 1473
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 228 DKPVSPKIEKIVFEITNLNLLEVSELSQVLKK 323
+K +PK++KIV +TN+N L E LK+
Sbjct: 1265 EKEAAPKLQKIVLSLTNVNSLSGVEGLPKLKE 1296
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,408,883
Number of Sequences: 37544
Number of extensions: 246936
Number of successful extensions: 681
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -