Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2h12
(723 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X79865-1|CAA56249.1| 198|Homo sapiens mitochondrial ribosomal p... 96 1e-19
BC007497-1|AAH07497.1| 198|Homo sapiens mitochondrial ribosomal... 96 1e-19
BC002344-1|AAH02344.1| 198|Homo sapiens mitochondrial ribosomal... 96 1e-19
AF059736-1|AAG32154.1| 198|Homo sapiens mitoribosomal protein L... 96 1e-19
AF105278-1|AAD16894.1| 99|Homo sapiens 5c5-2 protein protein. 79 2e-14
AB051337-1|BAB54927.1| 59|Homo sapiens mitochondrial ribosomal... 69 1e-11
U25041-1|AAC73110.1| 178|Homo sapiens 5C5 protein. 44 6e-04
BC068531-1|AAH68531.1| 856|Homo sapiens ATPase, H+ transporting... 31 4.2
BC022300-1|AAH22300.1| 372|Homo sapiens ATP6V0A2 protein protein. 31 4.2
AF112972-1|AAD04632.1| 856|Homo sapiens TJ6 protein. 31 4.2
>X79865-1|CAA56249.1| 198|Homo sapiens mitochondrial ribosomal
protein L7L12 protein.
Length = 198
Score = 95.9 bits (228), Expect = 1e-19
Identities = 54/145 (37%), Positives = 80/145 (55%), Gaps = 5/145 (3%)
Frame = +3
Query: 219 EGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPDXXXXXXXXXXXXXXXXXXX 398
+ K PKI+++V +I +L LLE+S+L+++LKK L + D
Sbjct: 54 DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLVPMGGVMSGAVPAAAA 113
Query: 399 XXXXXXXXX-----TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVK 563
T FTV++T+ KV LIKE+K ++G NLVQAKK VES+P +K
Sbjct: 114 QEAVEEDIPIAKERTHFTVRLTEAKPVDKVKLIKEIKNYIQGINLVQAKKLVESLPQEIK 173
Query: 564 ADISKDEAEKLKEALTKVGAIIEIE 638
A+++K EAEK+K AL VG + +E
Sbjct: 174 ANVAKAEAEKIKAALEAVGGTVVLE 198
>BC007497-1|AAH07497.1| 198|Homo sapiens mitochondrial ribosomal
protein L12 protein.
Length = 198
Score = 95.9 bits (228), Expect = 1e-19
Identities = 54/145 (37%), Positives = 80/145 (55%), Gaps = 5/145 (3%)
Frame = +3
Query: 219 EGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPDXXXXXXXXXXXXXXXXXXX 398
+ K PKI+++V +I +L LLE+S+L+++LKK L + D
Sbjct: 54 DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLVPMGGVMSGAVPAAAA 113
Query: 399 XXXXXXXXX-----TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVK 563
T FTV++T+ KV LIKE+K ++G NLVQAKK VES+P +K
Sbjct: 114 QEAVEEDIPIAKERTHFTVRLTEAKPVDKVKLIKEIKNYIQGINLVQAKKLVESLPQEIK 173
Query: 564 ADISKDEAEKLKEALTKVGAIIEIE 638
A+++K EAEK+K AL VG + +E
Sbjct: 174 ANVAKAEAEKIKAALEAVGGTVVLE 198
>BC002344-1|AAH02344.1| 198|Homo sapiens mitochondrial ribosomal
protein L12 protein.
Length = 198
Score = 95.9 bits (228), Expect = 1e-19
Identities = 54/145 (37%), Positives = 80/145 (55%), Gaps = 5/145 (3%)
Frame = +3
Query: 219 EGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPDXXXXXXXXXXXXXXXXXXX 398
+ K PKI+++V +I +L LLE+S+L+++LKK L + D
Sbjct: 54 DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLVPMGGVMSGAVPAAAA 113
Query: 399 XXXXXXXXX-----TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVK 563
T FTV++T+ KV LIKE+K ++G NLVQAKK VES+P +K
Sbjct: 114 QEAVEEDIPIAKERTHFTVRLTEAKPVDKVKLIKEIKNYIQGINLVQAKKLVESLPQEIK 173
Query: 564 ADISKDEAEKLKEALTKVGAIIEIE 638
A+++K EAEK+K AL VG + +E
Sbjct: 174 ANVAKAEAEKIKAALEAVGGTVVLE 198
>AF059736-1|AAG32154.1| 198|Homo sapiens mitoribosomal protein L12
protein.
Length = 198
Score = 95.9 bits (228), Expect = 1e-19
Identities = 54/145 (37%), Positives = 80/145 (55%), Gaps = 5/145 (3%)
Frame = +3
Query: 219 EGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPDXXXXXXXXXXXXXXXXXXX 398
+ K PKI+++V +I +L LLE+S+L+++LKK L + D
Sbjct: 54 DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLVPMGGVMSGAVPAAAA 113
Query: 399 XXXXXXXXX-----TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVK 563
T FTV++T+ KV LIKE+K ++G NLVQAKK VES+P +K
Sbjct: 114 QEAVEEDIPIAKERTHFTVRLTEAKPVDKVKLIKEIKNYIQGINLVQAKKLVESLPQEIK 173
Query: 564 ADISKDEAEKLKEALTKVGAIIEIE 638
A+++K EAEK+K AL VG + +E
Sbjct: 174 ANVAKAEAEKIKAALEAVGGTVVLE 198
>AF105278-1|AAD16894.1| 99|Homo sapiens 5c5-2 protein protein.
Length = 99
Score = 78.6 bits (185), Expect = 2e-14
Identities = 37/71 (52%), Positives = 51/71 (71%)
Frame = +3
Query: 426 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEA 605
T FTV++T+ KV LIKE+K ++G NLVQAKK VES+P +KA+++K EAEK+K A
Sbjct: 29 THFTVRLTEAKPVDKVKLIKEIKNYIQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAA 88
Query: 606 LTKVGAIIEIE 638
L VG + +E
Sbjct: 89 LEAVGGTVVLE 99
>AB051337-1|BAB54927.1| 59|Homo sapiens mitochondrial ribosomal
protein L7/L12 protein.
Length = 59
Score = 69.3 bits (162), Expect = 1e-11
Identities = 32/57 (56%), Positives = 43/57 (75%)
Frame = +3
Query: 468 KVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEALTKVGAIIEIE 638
KV LIKE+K ++G NLVQAKK VES+P +KA+++K EAEK+K AL VG + +E
Sbjct: 3 KVKLIKEIKNYIQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTVVLE 59
>U25041-1|AAC73110.1| 178|Homo sapiens 5C5 protein.
Length = 178
Score = 44.0 bits (99), Expect = 6e-04
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Frame = +3
Query: 219 EGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPD-----XXXXXXXXXXXXXX 383
+ K PKI+++V +I +L LLE+S+L+++LKK L + D
Sbjct: 54 DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLVPMGGVMSGAVPAAAA 113
Query: 384 XXXXXXXXXXXXXXTSFTVKMTKFDDKQKVALIKEVKGLLE 506
T FTV+ T+ KV LIKE+K ++
Sbjct: 114 QEAVEEDIPIAKERTHFTVRRTEAKPVDKVKLIKEIKNYIK 154
>BC068531-1|AAH68531.1| 856|Homo sapiens ATPase, H+ transporting,
lysosomal V0 subunit a2 protein.
Length = 856
Score = 31.1 bits (67), Expect = 4.2
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +3
Query: 150 LSRCSVLRQ---EVTQTVTPLTIPVPEGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLK 320
+ RC L + + Q + IP+PEG P +P +++++ L LEV EL +V K
Sbjct: 55 VKRCEELERILVYLVQEINRADIPLPEGEASPPAPPLKQVLEMQEQLQKLEV-ELREVTK 113
Query: 321 KRLNL 335
+ L
Sbjct: 114 NKEKL 118
>BC022300-1|AAH22300.1| 372|Homo sapiens ATP6V0A2 protein protein.
Length = 372
Score = 31.1 bits (67), Expect = 4.2
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +3
Query: 150 LSRCSVLRQ---EVTQTVTPLTIPVPEGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLK 320
+ RC L + + Q + IP+PEG P +P +++++ L LEV EL +V K
Sbjct: 55 VKRCEELERILVYLVQEINRADIPLPEGEASPPAPPLKQVLEMQEQLQKLEV-ELREVTK 113
Query: 321 KRLNL 335
+ L
Sbjct: 114 NKEKL 118
>AF112972-1|AAD04632.1| 856|Homo sapiens TJ6 protein.
Length = 856
Score = 31.1 bits (67), Expect = 4.2
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +3
Query: 150 LSRCSVLRQ---EVTQTVTPLTIPVPEGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLK 320
+ RC L + + Q + IP+PEG P +P +++++ L LEV EL +V K
Sbjct: 55 VKRCEELERILVYLVQEINRADIPLPEGEASPPAPPLKQVLEMQEQLQKLEV-ELREVTK 113
Query: 321 KRLNL 335
+ L
Sbjct: 114 NKEKL 118
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,175,573
Number of Sequences: 237096
Number of extensions: 1418501
Number of successful extensions: 3344
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3344
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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