Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2h12
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93785-3|CAB07857.1|  173|Caenorhabditis elegans Hypothetical pr...   118   4e-27
U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U00045-3|AAL02502.1|  868|Caenorhabditis elegans Temporarily ass...    28   7.8  

>Z93785-3|CAB07857.1|  173|Caenorhabditis elegans Hypothetical
           protein W09D10.3 protein.
          Length = 173

 Score =  118 bits (284), Expect = 4e-27
 Identities = 64/142 (45%), Positives = 86/142 (60%)
 Frame = +3

Query: 210 PVPEGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPDXXXXXXXXXXXXXXXX 389
           P+P   D+ +S K+  +V EI NL+LL+VS+L+  LKKRLN+PD                
Sbjct: 34  PLPSE-DRAISAKVSSLVEEIANLSLLDVSDLNWALKKRLNIPDQPLMAAAAAAPAAQAE 92

Query: 390 XXXXXXXXXXXXTSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKAD 569
                        +FTVK+TKFDD +K+A+IKE++  + G NLVQAKKFVE+ P  VK D
Sbjct: 93  AEAASDVPQKM--TFTVKLTKFDDTKKIAIIKEIRNAIPGLNLVQAKKFVETAPVNVKED 150

Query: 570 ISKDEAEKLKEALTKVGAIIEI 635
           + K EA++LK  L K GA IEI
Sbjct: 151 LGKAEADELKAILEKAGATIEI 172


>U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical
           protein D1044.6 protein.
          Length = 1009

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = +3

Query: 81  SKNKTRNMNGIRIIKNVNLQWRSLSRCSVLRQEVTQTVTPLTIPVPEGVDKPVSPKIEKI 260
           S N TR +    + +N  +QW + +   +   EV + +  L  P        +SPK ++I
Sbjct: 588 SNNATRTVVAATVNEN-GIQWPAET---INIDEVVREIRGLMAPTRRNFAISLSPKTDEI 643

Query: 261 VFEITNLNLLE 293
            ++  NLN L+
Sbjct: 644 DYQAINLNRLK 654


>U00045-3|AAL02502.1|  868|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 204, isoform b protein.
          Length = 868

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = +3

Query: 36  IPTHSQTN--IILF---ENLSKNKTRNMNGIRIIKNVNLQWRSLSRCSVLRQEVTQTVTP 200
           +P+ SQ +  + LF   E  S+NK+   +   + K   LQ  S SR ++ RQ    TV+P
Sbjct: 54  VPSSSQPSSFVELFDEEERKSRNKSVKWDDTLVSKEEILQVNSASRPALPRQHSASTVSP 113

Query: 201 L 203
           L
Sbjct: 114 L 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,470,825
Number of Sequences: 27780
Number of extensions: 248244
Number of successful extensions: 894
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)